Input parameters:

  Query = CsaV3_3G010230 (Len=423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G010230, Len=423):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYL 80  
WD40-rpts                                           (_____________WD 1_____________)   (_______

Query       81 MLAQVQLPLEDSENDARHYDDDRADAGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPS 160 
WD40-rpts      __________WD 2________________)          (______________WD 3_____________)      

Query      161 KPPLDGTCNPDLRLRGHNTEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKTLEAMQIFKVHEGVVEDVAWHLRHE 240 
WD40-rpts             (_________________WD 4_________________)         (_________________WD 5__

Query      241 YLFGSVGDDQYLLVWDLRTPSANKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALHTFDCHKEEV 320 
WD40-rpts      _______________)      (_________________WD 6_________________)    (_____________

Query      321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQ 400 
WD40-rpts      ____WD 7_________________)                 (_________________WD 8_______________

Query      401 IWQMAENIYHDEDDLPEEPPKAS 423 
WD40-rpts      __)                    

8 WD40-repeats found in QUERY=CsaV3_3G010230 (Len=423):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    38-69       3.08  242.00  0.03359        7.5%     20.02
  WD 2:  Seg  3    73-111      3.86  274.02  0.01256        7.5%     -23.38
  WD 3:  Seg  5   122-154      4.35  294.15  0.00674       12.5%     44.86
  WD 4:  Seg  8   168-207      6.77  394.22  0.00030       32.5%     53.69
  WD 5:  Seg 12   217-256      6.55  385.22  0.00040       25.0%     52.75
  WD 6:  Seg 16   263-302      7.58  427.95  0.00011       27.5%     51.84
  WD 7:  Seg 20   307-346      7.48  423.61  0.00012       27.5%     50.94
  WD 8:  Seg 24   364-403      6.44  380.59  0.00046       30.0%     54.90

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   38-69     -------HALEWPSLTVEWLP-DRE-E-P-PGKDYSVQKMILG
   WD 2   73-111    SENEPNYLMLAQVQLPLEDSE-NDA-R-H-YDDDRADAGGFGC
   WD 3  122-154    -------INHDGEVNRARYMP-QNPFI-I-ATKTVSAEVFVFD
   WD 4  168-207    CNPDLRLRGHNTEGYGLSWSK-FKQGH-L-LSGSDDAQICLWD
   WD 5  217-256    LEAMQIFKVHEGVVEDVAWHL-RHE-Y-LFGSVGDDQYLLVWD
   WD 6  263-302    NKPVQSVVAHQSEVNCLAFNP-FNEWV-V-ATGSTDKTVKLFD
   WD 7  307-346    STALHTFDCHKEEVFQVGWNP-KNE-TIL-ASCCLGRRLMVWD
   WD 8  364-403    PELLFIHGGHTSKISDFSWNPCEDW-V-V-ASVAEDNILQIWQ

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DGK-R-L-VSGSEDGTIKVWD