Input parameters:

  Query = CmaCh11G010530 (Len=302)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G010530, Len=302):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSHKIETGHQDMVHDVQMDYYGKRIATASSDFTIKIISVSKKSDSQLLASLSGHKGPVWQVAWAHPKFGSLLASSSYDG 80  
WD40-rpts      (_________________WD 1________________)      (__________________WD 2____________

Query       81 QVIIWKEGNQYQWVQAHVFNAHKSSVNSIAWAPHELGLCLACGSSDGSISVFIARSDGGWDNNQIEQAHSVGVTSVSWGP 160 
WD40-rpts      _____)(_____________________WD 3____________________)          (________________

Query      161 TTAPGSLIGSSSVDPVWKLASGGFDSTVKVWTLKDGSWRRDSSPALQMHTDWVRDVAWSPNLGLQKSTIASGSQDGTVII 240 
WD40-rpts      ______WD 4_____________________)       (___________________WD 5_________________

Query      241 WSVAKEGGKWEGIVMNDFKTPIWKVSWSLTGDLLAVADGNNTVTLWKEAVDGKWQQVTKVEP 302 
WD40-rpts      _)(____________________WD 6___________________)               

6 WD40-repeats found in QUERY=CmaCh11G010530 (Len=302):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       9.13  492.00  1.5e-05       30.0%     47.44
  WD 2:  Seg  4    46-86       8.41  462.07  3.7e-05       35.0%     56.92
  WD 3:  Seg  8    87-133      7.95  443.16  6.6e-05       35.0%     56.06
  WD 4:  Seg 12   144-192      6.90  399.72  0.00026       40.0%     47.57
  WD 5:  Seg 15   200-242      8.28  456.75  4.3e-05       35.0%     43.73
  WD 6:  Seg 18   243-287      8.04  446.97  5.9e-05       17.5%     55.57

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     -MS-----SHKIETGHQDMVHDVQMDYY----G--------------KRIATASSDFTIKIIS
   WD 2   46-86     -SQ-----LLASLSGHKGPVWQVAWAHP--KFG--------------SLLASSSYDGQVIIWK
   WD 3   87-133    EGNQYQWVQAHVFNAHKSSVNSIAWAPH--ELG--------------LCLACGSSDGSISVFI
   WD 4  144-192    ----------QIEQAHSVGVTSVSWGPT----TAPGSLIGSSSVDPVWKLASGGFDSTVKVWT
   WD 5  200-242    -RD-----SSPALQMHTDWVRDVAWSPNLGLQK--------------STIASGSQDGTVIIWS
   WD 6  243-287    VAKEGGKWEGIVMNDFKTPIWKVSWSLT----G--------------DLLAVADGNNTVTLWK

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSPD----G--------------KRLVSGSEDGTIKVWD