Input parameters:

  Query = CsaV3_6G037940 (Len=379)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G037940, Len=379):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAIAVHQFAHCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYV 80  
WD40-rpts      (________________WD 1________________)     (_________________WD 2_______________

Query       81 WNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLA 160 
WD40-rpts      _)     (_________________WD 3________________)  (___________________WD 4________

Query      161 TTSTDGKCRIFSTFIKGVDTKDSKAGTFSDSKFGELIVQLDLSFSWAFGVKWSASGNTLAYAGHNSMIYFVDEVGPSPLA 240 
WD40-rpts      ___________)                     (_________________WD 5________________)    (___

Query      241 QSVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGEKKTASGSKYGSQFSEAFGKLYGQPRQGVGND 320 
WD40-rpts      ______________WD 6________________)(__________________WD 7__________________)   

Query      321 SVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSGLDGKVVIWDLEGQDDLSQYL 379 
WD40-rpts        (____________________WD 8____________________)           

8 WD40-repeats found in QUERY=CsaV3_6G037940 (Len=379):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       7.75  434.68  8.6e-05       10.0%     49.90
  WD 2:  Seg  5    44-82       8.97  485.00  1.8e-05       25.0%     55.73
  WD 3:  Seg  9    88-126      7.24  413.53  0.00017       15.0%     54.41
  WD 4:  Seg 13   129-172      8.93  483.49  1.9e-05       25.0%     53.62
  WD 5:  Seg 17   194-232      7.55  426.61  0.00011       25.0%     57.75
  WD 6:  Seg 21   237-275      6.71  391.94  0.00032        5.0%     49.62
  WD 7:  Seg 25   276-317      6.49  382.75  0.00043       12.5%     28.74
  WD 8:  Seg 28   323-368      6.16  369.09  0.00066       17.5%     48.92

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     --M----TAIAVHQFAHCITCHAW-------SPDHSMV--AFCPNNNEVHIYK
   WD 2   44-82     -WE----RVHVLQKHDQLISGIDW-------SVRSNRI--VTASHDRNSYVWN
   WD 3   88-126    -WV----PTLVILRLNRAALCVQW-------SPKENKF--AVGSGAKTVCICY
   WD 4  129-172    QENNWWVSKLIRKRHDSSVTNVAW-------HPNNLLL--ATTSTDGKCRIFS
   WD 5  194-232    -GE----LIVQLDLSFSWAFGVKW-------SASGNTL--AYAGHNSMIYFVD
   WD 6  237-275    -SP----LAQSVAFRDLPLRDILF-------VSERMVI--GVGFDCHPMAFAA
   WD 7  276-317    DER----GIWSFVRFLGEKKTASG-------SKYGSQFSEAFGKLYGQPRQGV
   WD 8  323-368    -ES----SRLRGCVHENCINCIVPLKEPGGRGSTIKRF--STSGLDGKVVIWD

   WD40 Template    TGE----CLRTLSGHTSGVTSVSF-------SPDGKRL--VSGSEDGTIKVWD