Input parameters:

  Query = CmaCh01G005410 (Len=567)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G005410, Len=567):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKMMNNGYNSSFNSNSVGLMSSAATTAGSSSSSTSTTNTNSQSQGLKTYFKTPEGRYKLHYEKTHPPGFPPFSHGKSVSQ 80  
WD40-rpts                (_________________WD 1_________________) (_________________WD 2_______

Query       81 VTLAQLKDKPAQAGPTPSLSSSTSASSGVRYAAAKFLGVGGGNGVRAIGFAGGNGSGKAINGTSRSGSLAGSNGSHSILN 160 
WD40-rpts      __________)                                         (__________________WD 3_____

Query      161 PNYDGKGTYLIFNVGDTIFIGDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240 
WD40-rpts      ____________)(____________________WD 4____________________)                     

Query      241 LVGAQHYNKEGTVNNSRCVCIAWIPKSDSAFVVAHADGNLYVYEKSKDGSVDSTFPVIKDQTQFSVAHARSSKSNPIARW 320 
WD40-rpts                                                                               (______

Query      321 HICQGSINNVAFSTDGVYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCTWSGDGKYILTGGEDDLVTVWSMEDRKV 400 
WD40-rpts      ___________WD 5________________)   (_________________WD 6________________)   (__

Query      401 VAWGEGHNSWVSGVAFDSYWSSPASDDTEENVVYRFGSVGQDTQLLLWDLSMDEIVVPLRRCPPGGSPTFSAGSQSAHWD 480 
WD40-rpts      _____________________WD 7_______________________)(_____________________WD 8_____

Query      481 SITPLGTLQPAPCMRDVPKLSPVVAHRVHTEPLSGIIFTQESILTACREGHVKIWMRPSSETQSSNSEPLVSSSMLAGPK 560 
WD40-rpts      _______________)           (____________WD 9___________)                        

Query      561 VGSSTLK 567 
WD40-rpts             

9 WD40-repeats found in QUERY=CmaCh01G005410 (Len=567):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-50       3.96  278.13  0.01107       12.5%     12.55
  WD 2:  Seg  2    52-91       3.49  258.79  0.02008       12.5%     -0.12
  WD 3:  Seg  6   133-173      7.03  405.09  0.00022       20.0%     52.28
  WD 4:  Seg 10   174-219      3.19  246.52  0.02926       17.5%     39.15
  WD 5:  Seg 22   314-352      8.71  474.26  2.5e-05       25.0%     55.63
  WD 6:  Seg 26   356-394      9.16  493.02  1.4e-05       22.5%     57.06
  WD 7:  Seg 30   398-449      7.03  405.01  0.00022       27.5%     55.44
  WD 8:  Seg 34   450-496      3.58  262.40  0.01797       12.5%     10.27
  WD 9:  Seg 37   508-536      5.30  333.41  0.00200       15.0%     43.13

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-50     SF-NSN---SVGLMSSAATTAGSSSSS------T---S-------------TTNTNSQS--QGLKTYF
   WD 2   52-91     TP-EGR---YKLHYEKTHPPGFPPFSH------G---K-------------SVSQVTLA--QLKDKPA
   WD 3  133-173    -G-NGS---GKAINGTSRSGSLAGSNG------S---H-------------SILNPNYDGKGTYLIFN
   WD 4  174-219    VG-DTIFIGDLNSPDKDPIKSLHFSNS------NPICH-------------AFDPEAKD--GHDLLIG
   WD 5  314-352    -S-NPI---ARWHICQGSINNVAFSTD------G---V-------------YLATVGRD--GYLRVFD
   WD 6  356-394    -E-QLI---CGGKSYYGALLCCTWSGD------G---K-------------YILTGGED--DLVTVWS
   WD 7  398-449    -R-KVV---AWGEGHNSWVSGVAFDSY------W---SSPASDDTEENVVYRFGSVGQD--TQLLLWD
   WD 8  450-496    LSMDEI---VVPLRRCPPGGSPTFSAGSQSAHWD---S-------------ITPLGTLQ--PAPCMRD
   WD 9  508-536    -------------VHTEPLSGIIFTQE------S------------------ILTACRE--GHVKIWM

   WD40 Template    TG-ECL---RTLSGHTSGVTSVSFSPD------G---K-------------RLVSGSED--GTIKVWD