Input parameters:

  Query = CsaV3_4G035140 (Len=818)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G035140, Len=818):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIEFYRNSSIEWKPSPVVALASSADDSQVAAAREDGSLEIWLVSPGSVGWHCQLTISGDPTSRVSSLVWCSARSKDRPSG 80  
WD40-rpts        (_________________WD 1_________________)              (_________________WD 2__

Query       81 RLFSSSIDGSISEWDLFDLTQKSALESIGVSIWQIAAASSSSPEVHREEVKTQDTENGHVTDDETDCQDCSESEDDSDSS 160 
WD40-rpts      ______________)   (___________________WD 3___________________)   (______________

Query      161 ELHVQSSDTSLAIACDDGCVRIYNIGDAEEFIYKRSLSRVSGRVLSVTWSNDAERIFSGSSDGFIRCWNASLGHEIYRIT 240 
WD40-rpts      ___WD 4________________)(____________________WD 5___________________)           

Query      241 AGLGGLGSGPELCVWSLLFLRCGTLVSADSTGSVQFWDSNHGTLLQAHTLHKGDVNALAVTPNHNRVYSAGSDGQVILYK 320 
WD40-rpts      (________________WD 6________________)   (_________________WD 7________________)

Query      321 LSNENVGSSEDKGSSEMMKKWIYVGHVRAHTHDIRALTVAVPICREEPLQDDVVKRIRHRKKPNDFSYRKWAHLGVPMLM 400 
WD40-rpts                                                           (_________________WD 8_____

Query      401 SGGDDTKLFAYSAQEFTKFSPHDICPAPQRAPMQLVLNTVFNQAPLLLVQGAHSLDILCIRPKSGSFGDKACGPSKGHTK 480 
WD40-rpts      ___________)(______________________WD 9_____________________)                   

Query      481 ADLLVRVKSKASRKIICSTISNSGKLFAYSDHTKPNLFELKKSGGSKGSWTVSRRKLPNVLPFAHSMVFSFDSSRLIIAG 560 
WD40-rpts       (________________WD10________________)  (_____________________WD11_____________

Query      561 HDKRIYVVDVGSLEVLHSFTPFRELQDDTLPPTEPPITKIFTSSDGQWLAAVNCFGDIYVFNMEIMRQHWFISRLDGASI 640 
WD40-rpts      ________)          (___________________WD12__________________)   (______________

Query      641 TAGGFPQWNNNVLVVTTSSNQVYAFDVEAKQLGDWSMRHTQALPKRFQEFPGEVIGLSFPPSATSLPVIVYSSRAMCLID 720 
WD40-rpts      ____WD13_________________)            (______________WD14______________)        

Query      721 FKMSVDQDDEYVMISGQDSTVKSLWGTPINGKLKRKLRDCQIEGRPHGRKNFEIFPFRDPVLLIGHLSKTSLLIIEKPWL 800 
WD40-rpts                                                                                      

Query      801 EVANTFDTAPVHRHIYGT 818 
WD40-rpts                        

14 WD40-repeats found in QUERY=CsaV3_4G035140 (Len=818):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       8.35  459.77  4.0e-05       20.0%     56.83
  WD 2:  Seg  6    57-95       6.22  371.51  0.00061       30.0%     24.74
  WD 3:  Seg  9    99-142      5.38  336.84  0.00180       12.5%     33.52
  WD 4:  Seg 13   146-184      7.76  435.02  8.5e-05       12.5%     53.65
  WD 5:  Seg 17   185-229      9.19  494.42  1.3e-05       42.5%     48.68
  WD 6:  Seg 22   241-278      6.73  392.80  0.00032       32.5%     39.92
  WD 7:  Seg 25   282-320      8.97  485.07  1.8e-05       22.5%     54.65
  WD 8:  Seg 32   374-412      7.05  405.97  0.00021       12.5%     54.00
  WD 9:  Seg 36   413-461      5.56  344.37  0.00142       20.0%     33.10
  WD10:  Seg 39   482-519      3.55  261.47  0.01849       12.5%     50.25
  WD11:  Seg 43   522-569      7.59  428.36  0.00010       30.0%     45.77
  WD12:  Seg 48   580-622      7.55  426.39  0.00011       27.5%     42.68
  WD13:  Seg 51   626-666      5.87  357.29  0.00095       12.5%     53.95
  WD14:  Seg 55   679-712      3.24  248.68  0.02738        5.0%      1.18

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     EF---Y---------RNSSIEWKPSPVVALASSA--DDSQVAAAREDG-----SLEIWL
   WD 2   57-95     SG---D---------PTSRVSS-LVWCSARSKDR--PSGRLFSSSIDG-----SISEWD
   WD 3   99-142    -L---T---------QKSALESIGVSIWQIAAAS--SSSPEVHREEVKTQDTENGHVTD
   WD 4  146-184    -D---C---------QDCSESEDDSDSSELHVQS--SDTSLAIACDDG-----CVRIYN
   WD 5  185-229    IG---D----AEEFIYKRSLSRVSGRVLSVTWSN--DAERIFSGSSDG-----FIRCWN
   WD 6  241-278    AG-------------LGGLGSGPELCVWSLLFLR--CGT-LVSADSTG-----SVQFWD
   WD 7  282-320    -G---T---------LLQAHTLHKGDVNALAVTP--NHNRVYSAGSDG-----QVILYK
   WD 8  374-412    -V---K---------RIRHRKKPNDFSYRKWAHL--GVPMLMSGGDDT-----KLFAYS
   WD 9  413-461    AQ---EFTKFSPHDICPAPQRAPMQLVLNTVFNQ--APLLLVQGAHSL-----DILCIR
   WD10  482-519    -D---L---------LVRVKSKASRKIICSTISN--SGKLFAYSD-HT-----KPNLFE
   WD11  522-569    KS---G-GSKGSWTVSRRKLPNVLPFAHSMVFSF--DSSRLIIAGHDK-----RIYVVD
   WD12  580-622    TPFREL---------QDDTLPPTEPPITKIFTSS--DGQWLAAVNCFG-----DIYVFN
   WD13  626-666    -M---R---------QHWFISRLDGASITAGGFPQWNNNVLVVTTSSN-----QVYAFD
   WD14  679-712    ------------------HTQALPKRFQEFPGEV--IGLSFPPSATSL-----PVIVYS

   WD40 Template    TG---E---------CLRTLSGHTSGVTSVSFSP--DGKRLVSGSEDG-----TIKVWD