WDRR: WD40 Repeat Recognition
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| JobID: F8Z0E1659503255 Submitted: 2022-08-03 13:07:35 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79749120 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh14G019930 (Len=3052) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh14G019930, Len=3052): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDEEEETKKAEENYENDSDNEVTSDAQKSSQPSQDHTNIDGDKADIVSDGVVLGGINNVTTVEDEDQFEQVCLKDQEKTA 80
WD40-rpts
Query 81 GELSGGLLDSERSSNSEDARLSSGAVQESSQHMTGTFGAESDDSPVGQLQYESHSFSPGADKRLGHSTKPSTSSASFDSG 160
WD40-rpts
Query 161 YSPVGSPQKFKPKSVMPNVSPELLHLVDSAIMGKPESLDKLKNVVSGKESFGSSEEMETVAFSVVDSLLATMGGVESFEE 240
WD40-rpts
Query 241 DEENNPPSVMLNSRAAIVAGELIPWLPCLGDNEMIMSPRTRMTRGLLAILQACTRNRAMCSMAGLLGVLLRSAETIFVQD 320
WD40-rpts
Query 321 VGSSGKMSWDGAPLCYCIQYLSGHSLNVSDLRSWFQIITRILATKWAAKLLLALEKALCGKESKGPTSTFEFDGESSGLL 400
WD40-rpts
Query 401 GPGESRWPFSNGYAFATWIYIESFADTLNTATAAAAIAAAAAAKSGKSSAMSAAAAASALAGEGTAHMPRLFSFLSADNQ 480
WD40-rpts
Query 481 GIEAYFHAQFLVVECGSGKGRKASLHFTHAFKPQCWYFIGLEHTCKQGLIGKIESELRLYIDGALYESRPFEFPRISKPL 560
WD40-rpts
Query 561 AFCCIGTNPPPTMAGLQRRRRQCPLFAEMGPIYIFKEPIGAERMTRLASRGGDALPSFGNGAGLPWLATNDYVHHMAGES 640
WD40-rpts
Query 641 SLLDADITGCLHLLYHPSLLNGRFCPDASPLGAAGTLRRPAEVLGQVHVATRMRPAEALWALAYGGSMSLLPLVVSNVDE 720
WD40-rpts
Query 721 ASLQPQEGSTPLSCATTNLAAPIFRIISMAVQHPKNNEEFSRVRGPEILSRILNYLLRTLSSLDPGKHDGVEDEELVAAI 800
WD40-rpts
Query 801 VSLCQSQKSNHILKVQLFSTLLLDLKIWSLCNYGLQKKLLSTLADMVFTESSVMRDANAIQMLLDGCRRCYWTIGEKDSV 880
WD40-rpts
Query 881 NTFSLNEDQRPVGEVNALVDELLVVIELLMVAAPPSLASDDVRCLLGFMVDCPQPNQVARVLHLVYRLVVQPNTSRAHTF 960
WD40-rpts
Query 961 AEAFIACGGIETLLVLLQREVKAGDVTNPEAMTIHESSFFQESGVDSGDGVSERILDGDVGSVEEQKPNVSEKDWQFEST 1040
WD40-rpts
Query 1041 EIGGVRRFSAASGVRIERTLSISENYFVKNLGGISLSITADNARNNVYNVDKRDGIVVGIIGLVGALVASGHLKFDYFSP 1120
WD40-rpts
Query 1121 SDATTNILGSGLHDGGSSMFDDKVSLLLYALQKAFQAAPNKLMTNNVYTALMGASINASSTEDGLNFYDSGHRFEHLQLL 1200
WD40-rpts
Query 1201 LVLLRSLPYASKAFQSRALQDLLFLACSHPENRNSLTKMEEWPEWILEILISNYEMGESKNSQTVTVGDVEDLIHNFLII 1280
WD40-rpts
Query 1281 MLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGDHRVRREESLPIFKRRLLGALLDFSGRELQAQTQVIAAAAAGVAAE 1360
WD40-rpts
Query 1361 GLSPKDAKAEAENAAQLSVSLVENAIVILMLVEDHLRLQSKLSSASSVGDGYTSPLSLVSPLNNRANSLTSIGGKEPQEP 1440
WD40-rpts
Query 1441 ASLRGSISSAPSGLPIDVLASMADANGQISSVVMERLTAAAAAEPYESVSCAFVSYGSYATDLSDGWKYRSRLWYGVGLP 1520
WD40-rpts
Query 1521 SDNTLFGGGGSGWESWRYLEKDSSGNWIELPLIKKSVAMLQALLLDESGLGGGLGIGGGSGTGMGGMSALYQLLDSDQPF 1600
WD40-rpts
Query 1601 LCMLRMVLLSMREDDDGENGILMRNISFDDGIPEGRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYSEVWHSVSK 1680
WD40-rpts
Query 1681 DRNPLRKQYLEAILPPFVAILRRWRPLLAGIHELATADGLNPLTVDDRALAADALPIEAALAMIAPAWAAAFASPPAAMA 1760
WD40-rpts
Query 1761 LAMIAAGASGGETSAPVTTSQLRRDSSLLERKTTRLHTFSSFQKPLEMPNRAPSLPKDKAAAKAAALAAARDLERNAKIG 1840
WD40-rpts
Query 1841 SGRGLSAVAMATSAQRRNASDRDRVKRWNNSEAMAVAWMECLQPFDTKSVYGKDFNALSYKFIAVLVASFALARNIQRSE 1920
WD40-rpts
Query 1921 VDRRAQVDVIDHHRMCKGIRAWRKLVHYLIEMRCLFGPIGEQFPKPSRVFWKLDLMESSSRMRRCLRRNYRGSDHCGAAA 2000
WD40-rpts
Query 2001 NYEDQIDLKKDREDALSSSNASILAADAIAIEAVNDDDVQMEIDSLDGRADDVEQSVVNSKLTETSEQNLQASAESSNTQ 2080
WD40-rpts
Query 2081 LVNDQELIQGSSPVAPGYVPSELDERIILELPSTMVRPLKVIQGTFQVTTRRINFIVDSNDLNTTMDSSCKPKEDQEKDR 2160
WD40-rpts
Query 2161 TWMMSSLHQIHSRRYLLRRSALELFMVDRSNYFFDFGSTEGRKNAYRAIVQVRPPHLNDVYLATQRPEQLLKRTQLMERW 2240
WD40-rpts
Query 2241 ARWEISNFEYLMHLNTLAGRSYNDITQYPVFPWVLSDYSSESLDLSDSSSFRDLSKPVGALNADRLKKFQERYSSFEDPV 2320
WD40-rpts
Query 2321 IPKFHYGSHYSSAGTVLYYLFRVEPFTTLSIQLQGGKFDHADRMFLDISGTWNGVLEDMSDVKELVPELFYLPEILTNEN 2400
WD40-rpts
Query 2401 SIDFGTTQLGENLDSVRLPPWAKNPIDFIHKHRMALESEHVSAHLHEWIDLIFGYKQRGREAILANNVFFYITYEGTVDI 2480
WD40-rpts
Query 2481 DKISDPVQQRATQDQIAYFGQTPSQLLTVPHLRKKPLADVLHLQTIFRNPKDIRSYSVPTPERCNLPAAAIHATSDTVVI 2560
WD40-rpts
Query 2561 VDINAPAAHVAQHKWQPNTPDGQGAPFLFQHGKASMNSTSGTFMRMFKGQAGSAAEEWQFPQAPAYAASGIRSSSIVSIT 2640
WD40-rpts
Query 2641 LDKDIITGGHVDNSVKLISSDRGRTLETAYGHCAPVTCVSVSHDSNYLVTGSRDTTLLIWRLHRLSTSRSSAVSETAMGT 2720
WD40-rpts (_________________WD 1________________)________________WD
Query 2721 DMSTSGSGSNLSSILADKSRKHRIEGPIHVLRGHHREVVCCCVNSDLGIVVSCSQSSDVLIHSIRRGRLIRRLAGIEAHA 2800
WD40-rpts 2________________)(____________________WD 3___________________)(________________
Query 2801 VSLSSEGVILTWNESQCTLSTFTLNGNLIARAPFPYSSSISCMEISVDGESALIGINSSAQNNRTPTNSWEFKSNDFFTP 2880
WD40-rpts _WD 4_________________) (_________________WD 5________________)
Query 2881 DETSEDERLDVPVPSVCFLNLHTLKVFHTLRLKEGQDITALALNKDNTNLLVSTADMQLIVFTDPALSLKVVDQMLKIGW 2960
WD40-rpts (_________________WD 6_________________) (___________
Query 2961 EVQYLYSCWTNSASYIFASTETSMDISYLSRGPMLNRFASLISCLYRAIRSSSSLLLRCNSSPHTCCPKSGPLLVTRCKI 3040
WD40-rpts ______WD 7_________________) (_________________WD 8________________)
Query 3041 CDRLAPNLMNIH 3052
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh14G019930 (Len=3052): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 36 2663-2701 8.71 474.56 2.5e-05 45.0% 55.08 WD 2: Seg 39 2700-2738 3.72 268.18 0.01504 20.0% 24.78 WD 3: Seg 43 2739-2783 5.48 341.02 0.00158 20.0% 55.28 WD 4: Seg 47 2784-2823 3.83 273.05 0.01294 15.0% 51.23 WD 5: Seg 51 2827-2865 4.09 283.54 0.00936 15.0% 31.62 WD 6: Seg 56 2904-2943 4.15 286.17 0.00863 17.5% 57.70 WD 7: Seg 60 2949-2988 4.52 301.36 0.00539 5.0% 47.82 WD 8: Seg 63 2992-3030 6.68 390.66 0.00034 17.5% 25.41Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2663-2701 -G----R-----TLETAYGHCAP-VTCVSVSHDSNYLVTGSRDTTLLIWR WD 2 2700-2738 -W----R-----LHRLSTSRSSA-VSETAMGTDMSTSGSGSNLSSILADK WD 3 2739-2783 SR----KHRIEGPIHVLRGHHRE-VVCCCVNSDLGIVVSCSQSSDVLIHS WD 4 2784-2823 IR----R-----GRLIRRLAGIE-AHAVSLSSEGVILTWNESQCTLSTFT WD 5 2827-2865 -N----L-----IARAPFPYSSS-ISCMEISVDGESALIGINSSAQNNRT WD 6 2904-2943 -L----K-----VFHTLRLKEGQDITALALNKDNTNLLVSTADMQLIVFT WD 7 2949-2988 --LKVVD-----QMLKIGWEVQY-L--YSCWTNSASYIFASTETSMDISY WD 8 2992-3030 -G----P-----MLNRFASLISC-LYRAIRSSSSLLLRCNSSPHTCCPKS WD40 Template TG----E-----CLRTLSGHTSG-VTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |