JobID: F6PF01659514097 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CsaV3_1G045940 (Len=663)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G045940, Len=663):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPQFQPDAANAAAPTPTPTPTTAPSHSNTDDLDKDMLCPICMQIIKDAFLTTCGHSFCYMCIVTHLRNKSDCPCCAHFL 80  
WD40-rpts                                                                                      

Query       81 RSNSIFPNILLDKLLKKTSARQIKKTASPFGYLQQALQKGCDMSIKDLEELLTLLTEKKRKMEQEEAETNMQILLGFLYC 160 
WD40-rpts                                                                                      

Query      161 LRKQKLEELNEIQADLHYIKEDISSVEKQRLELYRSKERYSGKMKMLADDTVSTKSRSSLIDKHGNGINSGAQRSQGWMS 240 
WD40-rpts                                                                                      

Query      241 SGNSPNPRADAKIQLSSQGPLRKDAYCSSDLHSVAQSGLTVANKRRVHTQFNELQDCYLQKRRNWRKQLYKQEDRDIKFS 320 
WD40-rpts                                                          (_________________WD 1______

Query      321 GGESYNPSLEDFQSVLTSFMRYSRLRVIAELPHGDLFHSPNIVSSIEFDRDDEFFATAGVSRCIKVFEFSSVVNEPADVH 400 
WD40-rpts      __________)                   (________________WD 2________________)          (_

Query      401 FPVVEMATRSKLSCLSWNKYTKSHIASSDYEGIVTVWDVNTRQSVMEYEEHEKRAWSVDFSRSEPSMLVSGSDDCKVKIW 480 
WD40-rpts      ________________WD 3_________________)   (_________________WD 4_________________

Query      481 CTRQEASVFNIDMKANVCSVKYNPGSSLYVAVGSADHNIHYYDLRNISQPLHVFNGHKKAVSYVKFLSNNELASASTDST 560 
WD40-rpts      )   (_________________WD 5________________)    (________________WD 6____________

Query      561 LRLWDVKENLPICVYRGHTNEKNFVGLTVNSEYIACGSETNEVFIYHKAISKPMAWHRFSSDLEDNDEDAGSYFISAVCW 640 
WD40-rpts      ____)   (_________________WD 7________________)(________________________WD 8____

Query      641 KSDSPTILTANSQGTIKVLVLAP 663 
WD40-rpts      ___________________)

8 WD40-repeats found in QUERY=CsaV3_1G045940 (Len=663):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   293-331      6.02  363.41  0.00079       15.0%     40.07
  WD 2:  Seg  7   351-388      7.41  420.59  0.00013       20.0%     49.48
  WD 3:  Seg 10   399-438      6.35  376.98  0.00052       20.0%     52.01
  WD 4:  Seg 14   442-481      8.23  454.65  4.6e-05       32.5%     54.74
  WD 5:  Seg 18   485-523      5.98  361.67  0.00083       22.5%     56.21
  WD 6:  Seg 22   528-565      8.26  455.76  4.5e-05       32.5%     49.08
  WD 7:  Seg 26   569-607      8.36  459.80  4.0e-05       17.5%     57.08
  WD 8:  Seg 30   608-660      6.56  385.63  0.00040       17.5%     45.64

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  293-331    -ELQD-------------CYLQKRRNWRKQLYKQE-DRD-IKFSGGESYNPSLED
   WD 2  351-388    LPH---------------GDLFHSPNIVSSIEFDR-DDE-FFATAGVSRCIKVFE
   WD 3  399-438    -VHFP-------------VVEMATRSKLSCLSWNK-YTKSHIASSDYEGIVTVWD
   WD 4  442-481    -RQSV-------------MEYEEHEKRAWSVDFSRSEPS-MLVSGSDDCKVKIWC
   WD 5  485-523    -EASV-------------FNIDMKAN-VCSVKYNP-GSSLYVAVGSADHNIHYYD
   WD 6  528-565    -SQPL-------------HVFNGHKKAVSYVKFLS-NNE--LASASTDSTLRLWD
   WD 7  569-607    -NLPI-------------CVYRGHTNEKNFVGLTV-NSE-YIACGSETNEVFIYH
   WD 8  608-660    KAISKPMAWHRFSSDLEDNDEDAGSYFISAVCWKS-DSP-TILTANSQGTIKVLV

   WD40 Template    TGECL-------------RTLSGHTSGVTSVSFSP-DGK-RLVSGSEDGTIKVWD