Input parameters:

  Query = 2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=432)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (2AQ5_A_PDBID_CHAIN_SEQUENCE, Len=432):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80  
WD40-rpts                     (_____________________WD 1_____________________)       (_________

Query       81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 
WD40-rpts      ________WD 2_________________)          (_________________WD 3_________________)

Query      161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 
WD40-rpts         (__________________WD 4_________________)   (___________________WD 5_________

Query      241 RMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 
WD40-rpts      __________)(____________________WD 6___________________)    (__________________W

Query      321 YMPKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPK 400 
WD40-rpts      D 7__________________)   (____________________WD 8____________________)         

Query      401 SRANDEXTRACTVALUECONCATCHARMDAND 432 
WD40-rpts                                      

8 WD40-repeats found in QUERY=2AQ5_A_PDBID_CHAIN_SEQUENCE (Len=432):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    16-63       3.50  259.25  0.01980       17.5%     45.05
  WD 2:  Seg  7    71-110      8.18  452.42  5.0e-05       32.5%     49.72
  WD 3:  Seg 11   121-160      7.66  431.04  9.6e-05       40.0%     53.53
  WD 4:  Seg 15   164-204      7.95  443.03  6.7e-05       27.5%     56.47
  WD 5:  Seg 19   208-251      5.58  344.98  0.00140       25.0%     46.31
  WD 6:  Seg 23   252-296      5.95  360.50  0.00086       30.0%     45.63
  WD 7:  Seg 27   301-342      3.61  263.82  0.01720       20.0%     42.22
  WD 8:  Seg 30   346-391      4.67  307.43  0.00447        7.5%     36.65

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-63     GQPAKADQCYEDVRVS----QTTW--DSGFCA--VNP-KFMA-LICEA---S-------G-GGAFLVLP
   WD 2   71-110    -DKNVP-------LVC----GHTA--PVLDIA--WCPHNDNV-I-ASG---S-------E-DCTVMVWE
   WD 3  121-160    -REPVI-------TLE----GHTK--RVGIVA--WHP-TAQNVL-LSA---G-------C-DNVILVWD
   WD 4  164-204    -GAAVL-------TLG--PDVHPD--TIYSVD--WSR-DGAL-I-CTS---C-------R-DKRVRVIE
   WD 5  208-251    -GTVVA-------EKD----RPHE--GTRPVHAVFVS-EGKI-L-TTGFSRM-------S-ERQVALWD
   WD 6  252-296    TKHLEE-------PLSLQELDTSS--GVLLPF--FDP-DTNI-VYLCG---K-------G-DSSIRYFE
   WD 7  301-342    -APFLH-------YLS----MFSSKESQRGMG--YMP-KRGL-E-VNK---C-------EIARFYKLHE
   WD 8  346-391    -EPIAM-------TVP----RKSD--LFQEDL--YPP-TAGP-D-PAL---TAEEWLGGR-DAGPLLIS

   WD40 Template    TGECLR-------TLS----GHTS--GVTSVS--FSP-DGKR-L-VSG---S-------E-DGTIKVWD