Input parameters:

  Query = CsaV3_6G050930 (Len=316)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_6G050930, Len=316):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVFKTPFNGYSVKFSPFYESRIAVATAQNFGILGNGRLHVLDLNPAGPISEHIAFDTADGVYDVSWSESHDSLLVAAIA 80  
WD40-rpts      (_______________WD 1_______________)       (____________________WD 2____________

Query       81 DGSVKLYDLALPPTSNPIRSFHEHTREVHSADYNPVRRDSFLTSSWDDTSKLWTLDRPTSVRTFKEHAYCVYSSVWNPRH 160 
WD40-rpts      _______)      (_________________WD 3_________________)   (_________________WD 4_

Query      161 GDVFASASGDCTVRIWDVREPGSTMIIPAHDFEVLSCDWNKYDDCCIATASVDKSIRVWDVRSYRTPVSVLNGHGYAVRK 240 
WD40-rpts      ________________)   (_________________WD 5_________________)(___________________

Query      241 VKFSPHRQGLLASCSYDMTVCLWDYMLEDALVGRYDHHTEFAVGIDMSVLVEGLLASTGWDELVYVWQHGTDPRAP 316 
WD40-rpts      WD 6___________________)    (_________________WD 7_________________)        

7 WD40-repeats found in QUERY=CsaV3_6G050930 (Len=316):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       3.86  274.19  0.01250       15.0%     32.55
  WD 2:  Seg  4    44-88       7.06  406.32  0.00021       27.5%     56.06
  WD 3:  Seg  8    95-134      8.05  447.20  5.8e-05       27.5%     54.13
  WD 4:  Seg 12   138-177      8.54  467.55  3.1e-05       32.5%     56.17
  WD 5:  Seg 16   181-220      8.06  447.46  5.8e-05       25.0%     53.01
  WD 6:  Seg 20   221-264      8.12  450.02  5.4e-05       37.5%     55.26
  WD 7:  Seg 24   269-308      6.95  401.58  0.00024       20.0%     53.69

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     ---------MPVFKTPFNGYSVKFSP-F-YES-RIAVATAQNFGILGN
   WD 2   44-88     LNPAGPISEHIAFDTADGVYDVSWSE-SHD-S-LLVAAIADGSVKLYD
   WD 3   95-134    -SN----PIRSFHEHTREVHSADYNPVR-R-D-SFLTSSWDDTSKLWT
   WD 4  138-177    -PT----SVRTFKEHAYCVYSSVWNPRH-G-D-VFASASGDCTVRIWD
   WD 5  181-220    -PG----STMIIPAHDFEVLSCDWNKYD-D-C-CIATASVDKSIRVWD
   WD 6  221-264    VRS-YRTPVSVLNGHGYAVRKVKFSP-H-R-QGLLASCSYDMTVCLWD
   WD 7  269-308    -DA----LVGRYDHHTEFAVGIDMSV-L-V-EGLLASTGWDELVYVWQ

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSP-D-G-K-RLVSGSEDGTIKVWD