Input parameters:

  Query = CsaV3_3G005620 (Len=438)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G005620, Len=438):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETHERIMVPGRYVSKRERALLSS 80  
WD40-rpts                                                                                      

Query       81 TPASRAPDSFPNPSFQTPPVGSLSDSDLPRDILSLLRSRAKDYLQQGLMPKRMSVILDCHRKAVNSVQWSPSHAHLLASA 160 
WD40-rpts            (__________________WD 1_________________)   (_________________WD 2________

Query      161 AMDHTICIWNVWSTGQKLAFKSNFHNAAVKDVQWSQQGLSVLSCGYDCASRLIDVEKGTEVGVFKEDQGVAVVKFHPNNP 240 
WD40-rpts      _________)     (_________________WD 3________________)   (_________________WD 4_

Query      241 NLFLSGGLKGSLRMWDMRIGKMVNKYNRRLGPILDVEFTPNSNQFISSSDVSTSNSSESSIIIWDVTREVPLSYQVYMEA 320 
WD40-rpts      _______________)   (____________________WD 5____________________)(______________

Query      321 YTCPSVRCHPSDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYESHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSL 400 
WD40-rpts      _____WD 6__________________)(_____________________WD 7____________________)   (_

Query      401 LIHKLKASEQACIDIAIHPTLPNVIASCSWNGKISVFQ 438 
WD40-rpts      ________________WD 8_________________)

8 WD40-repeats found in QUERY=CsaV3_3G005620 (Len=438):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    87-127      5.43  338.84  0.00169       20.0%     28.76
  WD 2:  Seg  4   131-170      8.19  452.91  4.9e-05       32.5%     52.89
  WD 3:  Seg  8   176-214      8.34  459.14  4.0e-05       20.0%     55.99
  WD 4:  Seg 12   218-256      6.92  400.47  0.00025       30.0%     56.77
  WD 5:  Seg 16   260-305      8.05  447.36  5.8e-05       22.5%     50.28
  WD 6:  Seg 20   306-348      7.49  424.20  0.00012       15.0%     55.33
  WD 7:  Seg 24   349-395      8.05  447.24  5.8e-05       30.0%     49.27
  WD 8:  Seg 28   399-438      6.92  400.58  0.00025       17.5%     52.97

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   87-127    -PD---SFP-------NPSFQTPPVGSLSDSDL-PRD-I-LS-----LLRSRAKDYLQQG
   WD 2  131-170    -KR---MSV-------ILDCHRKAVNSVQWSPS-HAHLL-AS-------AAMDHTICIWN
   WD 3  176-214    -QK---LAF-------KSNFHNAAVKDVQWSQQ-GLS-V-LS-------CGYDCASRLID
   WD 4  218-256    -GT---EVG-------VFKED-QGVAVVKFHPN-NPN-LFLS-------GGLKGSLRMWD
   WD 5  260-305    -GK---MVN-------KYNRRLGPILDVEFTPN-SNQ-F-ISSSDVSTSNSSESSIIIWD
   WD 6  306-348    VTREVPLSY-------QVYMEAYTCPSVRCHPS-DPA-F-IA-------QSNGGYIAIFS
   WD 7  349-395    LNP---PFKLDKYKRYESHGVSGFPIKCNFSLD-AKQ-I-IS-------GSSDGSIYFYD
   WD 8  399-438    -SL---LIH-------KLKASEQACIDIAIHPTLPNV-I-AS-------CSWNGKISVFQ

   WD40 Template    TGE---CLR-------TLSGHTSGVTSVSFSPD-GKR-L-VS-------GSEDGTIKVWD