WDRR: WD40 Repeat Recognition
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| JobID: EQLHW1659518674 Submitted: 2022-08-03 17:24:34 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79732438 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_5G024420 (Len=735) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_5G024420, Len=735): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYGDPQQFQQQHQQPPNQHPLGGDFSRGPPPPGPPMMRQPSASSTTLAPDFQQHHHPRHPSGPAPPPYEAHSDSFAAKRM 80
WD40-rpts (_____________________WD 1____________________)
Query 81 RKLTQRRAVDYTSTVVRYMQLRMWQRDSKDRTVLQSTPAAAIDMLPPAAYSDNPSTSFAAKFVHTSINKNRCSINRVLWT 160
WD40-rpts (_________________________WD 2______
Query 161 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRD 240
WD40-rpts __________________) (_________________WD 3________________) (_______________
Query 241 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGKELCSFHGHKN 320
WD40-rpts __WD 4________________) (_________________WD 5________________) (___________
Query 321 TVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQIEI 400
WD40-rpts ______WD 6________________) (_________________WD 7_________________)(_________
Query 401 TNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFSTGYSEQNPAGSARVTGNFVVPDGPTTPGPFPPGL 480
WD40-rpts __________WD 8__________________) (_________________WD 9____________
Query 481 ARNEGTIPGIGVAMPLSDTAAMGEHKQPHQISLPVGAPPLPPGPHPSLLAANQQHSFQQNPQQFMQQQQQQQQQQQQQSQ 560
WD40-rpts ____)
Query 561 HHQTQQMAPVPMQPQNLPQLQPPSHFPLLPHPNLPRPPQMPALNMPSQPGSLPSSGPASGPLPMPGPMGMQGSMNQMVPP 640
WD40-rpts
Query 641 MPQNHYMGMNPMHSGPMPTSGAPPSVQGFQNNLPNMQGPSNASGAPMYPQGGGFNRGQAGQMPMTPGFNPYQFGGQPGMP 720
WD40-rpts
Query 721 PPQPPGPPPHTQTPQ 735
WD40-rpts
 9 WD40-repeats found in QUERY=CsaV3_5G024420 (Len=735): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 12-58 4.15 286.24 0.00861 5.0% -24.18 WD 2: Seg 5 125-179 7.47 423.02 0.00012 22.5% 52.21 WD 3: Seg 9 183-221 8.87 481.20 2.0e-05 27.5% 55.99 WD 4: Seg 13 225-263 9.48 506.08 9.4e-06 32.5% 56.15 WD 5: Seg 17 267-305 9.90 523.40 5.5e-06 42.5% 57.97 WD 6: Seg 21 309-347 9.33 500.01 1.1e-05 30.0% 54.95 WD 7: Seg 25 351-390 8.10 449.19 5.5e-05 35.0% 58.32 WD 8: Seg 29 391-433 8.97 485.39 1.8e-05 32.5% 54.95 WD 9: Seg 32 447-485 5.09 324.85 0.00261 15.0% 22.82Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 12-58 HQ---QPP---------------NQHPLGGDFSRGPPPPGPPMMRQP-SASSTTLAPDFQQHHHPR WD 2 125-179 LP---PAAYSDNPSTSFAAKFVHT-------SINKNRCSINRVLWTP-TGRRLITGSQSGEFTLWN WD 3 183-221 -F---NFE---------------M-------ILQAHDQAIRSMVWSH-NDNWMVSGDDGGSIKYWQ WD 4 225-263 -N---NVK---------------A-------NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWD WD 5 267-305 -C---QEE---------------R-------SLSGHGWDVKSVDWHP-TKSLLVSGGKDNLVKLWD WD 6 309-347 -G---KEL---------------C-------SFHGHKNTVLCVKWNQ-NGNWVLTASKDQIIKLYD WD 7 351-390 -M---KEL---------------E-------SFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWL WD 8 391-433 VGHETPQI---------------E-------ITNAHDNSVWDLAWHP-IGYLLCSGSNDHTTKFWC WD 9 447-485 -T---GYS---------------E-------QNPAGSARVTGNFVVP-DGPTTPGPFPPGLARNEG WD40 Template TG---ECL---------------R-------TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD |
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