WDRR: WD40 Repeat Recognition
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JobID: EQ92R1349454537    Submitted: 2012-10-06 00:28:57

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Job status:  [Done] Total run time: 389798137 seconds.    [Download result as txt]    [Query sequence in FASTA]
Input parameters: 
  Query = gi_74676484_sp_Q08924.1_WDR6_YEAST_RTT10 (Len=1013)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3
Query sequence (gi_74676484_sp_Q08924.1_WDR6_YEAST_RTT10, Len=1013): 
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKDLSHYGPALCVKFYNDYVLAGYGPFIHVYDYHSATLINKCRLFHYNKVHGLSLSSEGKILAYGARSVTIVELEDVLKK 80  
WD40-rpts      (_____________WD 1_____________)(___________________WD 2___________________)    

Query       81 ESLVDFERINSDWITGATFSFDNLQIYLLTCYNKVLICDLNCEVLFRKSLGGERSILYSGIIKVFGPDKVYVNAGTVMGG 160 
WD40-rpts      (_________________WD 3________________)(____________________WD 4________________

Query      161 VIIWDLFSETKIHNLLGHEGSIFYVNLSNNGRYVASCSDDRSIRLWDLETGKQLSVGWSHTARIWNLMFFDNDSKLISVS 240 
WD40-rpts      ____)   (_________________WD 5________________)   (_________________WD 6________

Query      241 EDCTCRVWNIIESRENVAELSISNVYEVHLIKSIWGVDVKDDEMIAVTSGNDGRLKLIDLLQLKRHGDEETSFSLDDIAK 320 
WD40-rpts      ________)          (_________________WD 7_________________)_______________WD 8__

Query      321 QCGDIFEKNESIKGFQWFSFGVIAITSLGKILKYSDVTKQWKLLLTNEKFNSYPITNGIQTQNIAVFSNNKSDILLIKFS 400 
WD40-rpts      _______________)  (_________________WD 9________________)   (_________________WD

Query      401 KDSADIIETEEFHLDELSKTNNCLVTEYDDDSFLLTLQSPNPREKFVCLEISLQNLKIKSKHCFNKPENFSSSCLTSFRN 480 
WD40-rpts      10________________)                                  (__________________WD11____

Query      481 HILVGSRFSTLVIYNLLDESEEPFIIRRLSPGDTTTSIEFVEDKDNSAVFSVTNRDGYYVFIELTKNSLEEGPYRLSYKV 560 
WD40-rpts      ______________)             (_______________WD12______________)        (________

Query      561 LHSNKMMKGFLEGAFFNSKGEYITYGFKSSLFYLYNETNCYELASEVCGGSHRLWNLAKITDGHVLMYIKASRFHLRKIY 640 
WD40-rpts      ____________WD13___________________)                                            

Query      641 NSIVPETLENGVHGREIRDISICPVSNTNTNDNFKDGHIFCTASEDTTIKLGYFNNRTGKVQNFWTQRKHVSGLQRCQFI 720 
WD40-rpts      (________________________WD14_______________________)  (___________________WD15_

Query      721 NHKLMISSSAREELFLWELNDKYNKRPYMTIRQALPVSTNNSDLRIMDFDVKFISQSGDFLLVTVYSDSTIKIWHYRENQ 800 
WD40-rpts      _________________)                  (_________________WD16________________)  (__

Query      801 NKFDLIMQGRYKTCCLFNVVFIALKEELLVVISPTDGHLVVYNITEYVPFSVDPISGDLVDHKLDATISNLPAPVAQLPV 880 
WD40-rpts      __________________WD17____________________)                            (________

Query      881 HQSGVKSLDYVANATRTSATILTGGDDNGLGLSNLKLDDSNKVTLKTSDFIAAAASSTITSGMLINGGKEVITTSVDQVI 960 
WD40-rpts      ___________WD18__________________)  (_____________________WD19__________________

Query      961 RAWEITAGKLSLVDKKRTTVADTGSLEIISNDEDADSEKTLLIGGVGLSIWKK 1013
WD40-rpts      ___)


19 WD40-repeats found in QUERY=gi_74676484_sp_Q08924.1_WDR6_YEAST_RTT10 (Len=1013):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       3.38  254.20  0.02313       20.0%     38.07
  WD 2:  Seg  4    33-76       6.08  365.75  0.00073       27.5%     56.75
  WD 3:  Seg  8    81-119      6.64  388.86  0.00036       12.5%     55.21
  WD 4:  Seg 12   120-165      6.48  382.42  0.00044       27.5%     55.10
  WD 5:  Seg 16   169-207      9.36  501.22  1.1e-05       30.0%     56.06
  WD 6:  Seg 20   211-249      9.31  499.17  1.2e-05       32.5%     57.00
  WD 7:  Seg 24   260-299      6.24  372.25  0.00060       20.0%     54.53
  WD 8:  Seg 27   297-336      3.15  244.86  0.03078       27.5%     29.45
  WD 9:  Seg 31   339-377      6.83  396.69  0.00028        5.0%     51.38
  WD10:  Seg 35   381-419      7.88  440.02  7.3e-05       15.0%     53.32
  WD11:  Seg 42   454-495      6.30  375.01  0.00055       10.0%     50.46
  WD12:  Seg 47   509-543      4.84  314.72  0.00357       10.0%     35.49
  WD13:  Seg 51   552-596      6.76  393.87  0.00031       10.0%     49.06
  WD14:  Seg 58   641-693      7.11  408.51  0.00019       27.5%     37.77
  WD15:  Seg 62   696-738      6.33  376.03  0.00053       22.5%     55.48
  WD16:  Seg 67   757-795      4.75  310.75  0.00403       22.5%     25.86
  WD17:  Seg 70   798-843      6.18  369.98  0.00064       17.5%     52.67
  WD18:  Seg 74   872-914      6.46  381.40  0.00045       20.0%     50.28
  WD19:  Seg 78   917-964      8.33  458.67  4.1e-05       22.5%     48.16
Multiple sequence alignment of 19 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-32     ---------------MKD--------L-------------SH-YGPALC---VKF--YND----Y---VLAG---YGPFI-HVYD
   WD 2   33-76     YH-----SATLIN--KCR--------L-------------FH-YNKVHG---LSL--SSE----GKILAYGA---RSVTIVELED
   WD 3   81-119    -E-----S---LV--DFE--------R-------------IN-SDWITG---ATF--SFD----NLQIYLLT---CYNKV-LICD
   WD 4  120-165    LN--CEVL---FR--KSL--------G-------------GE-RSILYSGIIKVF--GPD----KVYVNAGT---VMGGV-IIWD
   WD 5  169-207    -E-----T---KI--HNL--------L-------------GH-EGSIFY---VNL--SNN----GRYVASCS---DDRSI-RLWD
   WD 6  211-249    -G-----K---QL--SVG--------W-------------SH-TARIWN---LMF--FDN----DSKLISVS---EDCTC-RVWN
   WD 7  260-299    -L-----S---IS--NVY--------E-------------VHLIKSIWG---VDV--KDD----EMIAVTSG---NDGRL-KLID
   WD 8  297-336    -L-----I---DL--LQL--------K-------------RH-GDEETS-----F--SLD----DIAKQCGDIFEKNESI-KGFQ
   WD 9  339-377    SF-----G---VI---AI--------T-------------SL-GKILKY---SDV--TKQ----WKLLLTNE---KFNSY-PITN
   WD10  381-419    -T-----Q---NI--AVF--------S-------------NN-KSDILL---IKF--SKD----SADIIETE---EFHLD-ELSK
   WD11  454-495    QN-----L---KIKSKHC--------F-------------NK-PENFSS---SCL--TSF----RNHILVGS---RFSTL-VIYN
   WD12  509-543    LS-----P------------------G-------------DT-TTSIEF---VED--KDN----SAVFSVTN---RDGYY-VFIE
   WD13  552-596    GPYRLSYK---VL--HSN--------K-------------MM-KGFLEG---AFF--NSK----GEYITYGF---KSSLF-YLYN
   WD14  641-693    NS-----I---VP--ETL--------ENGVHGREIRDISICP-VSNTNT---NDN--FKD----GHIFCTAS---EDTTI-KLGY
   WD15  696-738    NR-TGKVQ---NF--WTQ--------R-------------KH-VSGLQR---CQF--INH-----KLMISSS---AREEL-FLWE
   WD16  757-795    VS-----T---NN--SDL--------R-------------IM-DFDV-K---FIS--QSG----DFLLVTVY---SDSTI-KIWH
   WD17  798-843    EN-QNKFD---LI--MQG--------R-------------YK-TCCLFN---VVFIALKE----ELLVVISP---TDGHL-VVYN
   WD18  872-914    -P-----A---PV--AQL--------P-------------VH-QSGVKS---LDY--VANATRTSATILTGG---DDNGL-GLSN
   WD19  917-964    LD-----D---SN--KVTLKTSDFIAA-------------AA-SSTITS---GML--ING----GKEVITTS---VDQVI-RAWE

   WD40 Template    TG-----E---CL--RTL--------S-------------GH-TSGVTS---VSF--SPD----GKRLVSGS---EDGTI-KVWD
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Last modified: 09 Jan 2019