Input parameters:

  Query =  (Len=460)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (, Len=460):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFSEVFKLSSLLCKFSPDGKYLASCVQYRLVVRDVNTLQILQLYTCLDQIQHIEWSADSLFILCAMYKRGLVQVWSLEQ 80  
WD40-rpts      (_______________WD 1______________)(__________________WD 2__________________)   

Query       81 PEWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACLQGITFTRDGRYMALAERRDCKDYV 160 
WD40-rpts      (_________________WD 3_________________)  (__________________WD 4_______________

Query      161 SIFVCSDWQLLRHFDTDTQDLTGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYSAYEWSLGIKSVAWSPSSQFLAV 240 
WD40-rpts      ___)   (__________________WD 5_________________)  (__________________WD 6_______

Query      241 GSYDGKVRILNHVTWKMITEFGHPAAINDPKIVVYKEAEKSPQLGLGCLSFPPPRAGAGPLPSSESKYEIASVPVSLQTL 320 
WD40-rpts      __________)                         (_________________WD 7________________)    (

Query      321 KPVTDRANPKIGIGMLAFSPDSYFLATRNDNIPNAVWVWDIQKLRLFAVLEQLSPVRAFQWDPQQPRLAICTGGSRLYLW 400 
WD40-rpts      __________________WD 8_________________)(__________________WD 9_________________

Query      401 SPAGCMSVQVPGEGDFAVLSLCWHLSGDSMALLSKDHFCLCFLETEAVVGTACRQLGGHT 460 
WD40-rpts      )   (_________________WD10________________)                 

10 WD40-repeats found in QUERY= (Len=460):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       5.97  361.40  0.00084       25.0%     36.39
  WD 2:  Seg  4    36-77       6.44  380.87  0.00046       15.0%     55.95
  WD 3:  Seg  8    81-120      7.02  404.45  0.00022       22.5%     56.86
  WD 4:  Seg 12   123-164      6.28  373.97  0.00057        7.5%     55.71
  WD 5:  Seg 16   168-208      6.80  395.49  0.00029       20.0%     54.92
  WD 6:  Seg 20   211-251      8.37  460.40  3.9e-05       35.0%     58.89
  WD 7:  Seg 26   277-315      3.07  241.61  0.03399       20.0%     15.16
  WD 8:  Seg 28   320-360      7.49  424.11  0.00012       22.5%     51.65
  WD 9:  Seg 32   361-401      7.32  416.85  0.00015       17.5%     57.35
  WD10:  Seg 36   405-443      7.36  418.82  0.00014       12.5%     53.93

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     -----MNFSEVF--KLSSLLCKFSPD----GKYLAS-CVQ--Y--RL---V-VRD
   WD 2   36-77     VNTLQILQLYTC--LDQIQHIEWSAD----SLFILC-AMY--K-RGL---VQVWS
   WD 3   81-120    -PEW-HCKIDEG--SAGLVASCWSPD----GRHILNTTEF--H--LR---ITVWS
   WD 4  123-164    -TKS-VSYIKYP--KACLQGITFTRD----GRYMAL-AER--R--DCKDYVSIFV
   WD 5  168-208    -WQL-LRHFDTD--TQDLTGIEWAPN----GCVLAV-WDTCLE--YK---ILLYS
   WD 6  211-251    -GRL-LSTYSAYEWSLGIKSVAWSPS----SQFLAV-GSY--D--GK---VRILN
   WD 7  277-315    ------EAEKSP--QLGLGCLSFPPPRAGAGPLPSS-ESK--Y--EI---ASVPV
   WD 8  320-360    -LKP-VTDRANP--KIGIGMLAFSPD----SYFLAT-RND--NIPNA---VWVWD
   WD 9  361-401    IQKLRLFAVLEQ--LSPVRAFQWDPQ----QPRLAI-CTG--G--SR---LYLWS
   WD10  405-443    -CMS-VQVPGEG--DFAVLSLCWHLS----GDSMAL-LSK--D--HF---CLCFL

   WD40 Template    TGEC-LRTLSGH--TSGVTSVSFSPD----GKRLVS-GSE--D--GT---IKVWD