WDRR: WD40 Repeat Recognition
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| JobID: ELAWB1427470472 Submitted: 2015-03-27 23:34:32 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 311781029 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT3G50390.1 (Len=469) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT3G50390.1, Len=469): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSMHKKGTSRDVNSQAFTKLTKVETIPDPDIYDITYVDISPSEGSSSPLSKSPWSVQVDPSAVDSPYHSVKVTTDTTKE 80
WD40-rpts (__________________WD 1_________________)
Query 81 KSTNHSPNILLGSLVREEGHIYSLATSGDLLYTGSDSKNIRVWKNHVEFSSFKSNSGLVKAIVLAGDKIFTGHQDGKIRV 160
WD40-rpts (________________WD 2_______________)(________________WD 3_______________
Query 161 WKAASKESNVHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAALGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRV 240
WD40-rpts _)(_________________WD 4_________________)________________WD 5________________)
Query 241 SDLRCVESVNAHEDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFSETLLKQDCAVTAIAVDQSATLVYCGSS 320
WD40-rpts (________________WD 6________________) (_________________WD 7_________
Query 321 DGTVNFWERENNMKNGGVLKGHKLAVLCLVAAGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLAVERDQE 400
WD40-rpts _______) (________________WD 8_______________)(________________________WD 9__
Query 401 SVSGERRWIVYSGSLDRSVKMWRVSESSPPMVNQEFKLPDQFGGGGGGGPAELTVAPSFSAQGRISPQK 469
WD40-rpts ______________________)
 9 WD40-repeats found in QUERY=AT3G50390.1 (Len=469): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 35-75 6.72 392.40 0.00032 15.0% 1.64 WD 2: Seg 5 88-124 6.41 379.50 0.00048 25.0% 50.95 WD 3: Seg 9 125-162 8.37 460.40 3.9e-05 20.0% 50.47 WD 4: Seg 13 163-202 6.68 390.74 0.00034 5.0% 17.72 WD 5: Seg 16 201-239 8.72 474.68 2.5e-05 30.0% 48.79 WD 6: Seg 20 243-280 8.44 463.43 3.5e-05 35.0% 54.86 WD 7: Seg 24 290-328 8.42 462.35 3.7e-05 25.0% 47.00 WD 8: Seg 27 333-369 6.71 391.69 0.00033 30.0% 50.08 WD 9: Seg 31 370-423 7.43 421.76 0.00013 35.0% 52.62Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 35-75 ITY------VDISPSEGSSSPLSKSPWSVQVDP--------SAVDSPYHSVKVTT WD 2 88-124 -NI------L-LGSLVREEGHIYSL--ATSGDL--------LYTGSDSKNIRVWK WD 3 125-162 NHV------E-FSSFKSNSGLVKAIVLAGD--K--------IFTGHQDGKIRVWK WD 4 163-202 AAS------K-ESNVHRRVGTMPNLLDYIRNSI--------VPSSYFNFTRRNRS WD 5 201-239 -RS------S-AALGFRHLDAISCLALSEDKRL--------LYSGSWDKTFKVWR WD 6 243-280 -LR------C-VESVNAHEDAVNAVVSGFDG-L--------VFTGSADGTVKVWR WD 7 290-328 -HF------F-SETLLKQDCAVTAIAVDQSATL--------VYCGSSDGTVNFWE WD 8 333-369 -MK------N-GGVLKGHKLAV--LCLVAAGNL--------MFSGSADLGIRVWR WD 9 370-423 RPEGGGEHVC-LSVLTGHAGPVKCLAVERDQESVSGERRWIVYSGSLDRSVKMWR WD40 Template TGE------C-LRTLSGHTSGVTSVSFSPDGKR--------LVSGSEDGTIKVWD |
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