Input parameters:

  Query = At3g52030 (Len=454)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (At3g52030, Len=454):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRTETGDESSARKMRRKVPTSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSS 80  
WD40-rpts                                                                                      

Query       81 STSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDAS 160 
WD40-rpts                               (_________________WD 1________________)                

Query      161 SLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDG 240 
WD40-rpts            (_________________WD 2________________)   (________________WD 3___________

Query      241 TARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFI 320 
WD40-rpts      _____)   (________________WD 4________________)   (__________________WD 5_______

Query      321 GTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQV 400 
WD40-rpts      __________)   (_________________WD 6_________________)(_________________WD 7____

Query      401 VIEKRRGKRVSQDMEIDKIERKVRPQISCIAMGMKKMVTAHNGKCISVWKFNLS 454 
WD40-rpts      _____________)(_______________WD 8_______________)    

8 WD40-repeats found in QUERY=At3g52030 (Len=454):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   106-144      6.66  389.84  0.00035       17.5%     55.43
  WD 2:  Seg  8   167-205      4.83  314.33  0.00361       12.5%     35.79
  WD 3:  Seg 11   209-246      6.74  393.24  0.00031       22.5%     52.99
  WD 4:  Seg 15   250-287      7.42  421.01  0.00013       25.0%     54.04
  WD 5:  Seg 19   291-331      7.84  438.52  7.7e-05       20.0%     55.78
  WD 6:  Seg 23   335-374      7.38  419.59  0.00014       22.5%     54.21
  WD 7:  Seg 27   375-414      2.88  233.75  0.04318        2.5%     31.39
  WD 8:  Seg 31   415-450      4.79  312.71  0.00380       15.0%     45.06

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  106-144    RGRIEIERWEAHSH--RVSQCRMK---KGLLLTGVGDKVMRLWS
   WD 2  167-205    FDES-KK-LEVVSL--AWEYFDSVV-VVVVEIVGLVGTRISIWR
   WD 3  209-246    -QRS-IFPSRAGTF--PK-GLCMRY-IDPEAVVGCEDGTARVFD
   WD 4  250-287    -KTC-SQIIRTQGG--PITCLSLSD-N-QLFLSGSSLGRVTVSD
   WD 5  291-331    -DQP-VATLKSTITAGGIQTICFNQ-GTNLAFIGTTGGYVSCWD
   WD 6  335-374    -MDR-LWEKRVSPN--VVYSIQQLRNDTSVMVAGGIDGVLRMID
   WD 7  375-414    QKSG-RVLSRVIMD--DKFSTTSTR-NNQVVIEKRRGKRVSQDM
   WD 8  415-450    --EI-DKIERKVRP--QISCI--AM-GMKKMVTAHNGKCISVWK

   WD40 Template    TGEC-LRTLSGHTS--GVTSVSFSP-DGKRLVSGSEDGTIKVWD