WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| JobID: EI10W1659513926 Submitted: 2022-08-03 16:05:26 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79736416 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_1G003250 (Len=962) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_1G003250, Len=962): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKIRSVKLREAHKAASNGKPSFCSVLWDQQAYHIVTASSSESAISIHDSLLPSTTPKIIHQHREGVTALALSPNSTCLAS 80
WD40-rpts (_________________WD 1_________________) (_________________WD 2______
Query 81 GSMDRSVKLYKFPGGEFETNITRFTLPIRILGFNKSGSLLAAGGDDDGIKLVNTVDGSIARVLKGHKGAVTGLAFDPNSE 160
WD40-rpts __________) (_________________WD 3________________) (_________________WD 4__
Query 161 YLASVDSIGTVIIWELQSGSIIHNLKGIAPNTGSDPSVMNVLGWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHTQ 240
WD40-rpts ______________) (____________________WD 5____________________) (____________
Query 241 PICFLSWSPNGKYMATSSLDRQILIWDVDQKLDIDRQKFDERICCMAWKPIGNALAVIDVMGKYGVWESVVPSSMKPPTE 320
WD40-rpts _____WD 6_________________)(__________________WD 7_________________)
Query 321 DIPKLQSRNSNGLLLFDEEDEEPSAHENSSDLGEDSYHESEIPTRKRLRKHSTNDEILDEVDSEDFSLFPKLDSRKTSHR 400
WD40-rpts
Query 401 VKRDKLDNVDEGAIGKATYSRVKQQEAFQPGATPLQPGKKRFLCYNMLGSITTFEHDGYSHIEIDFHDTGSGPRVPSMND 480
WD40-rpts
Query 481 HFGFTMAALDENGSVFANPCKGEKNMSTLMYRPFGSWANNSEWSMRFDGEEVKVVAIGSRWVAAFTSLSYLRVFTDGGLQ 560
WD40-rpts
Query 561 KHILSLDGPVVTASGFKDELAFVTHSSTCLPSNDQVLEFRILNISNGTQLLRGRLPLTPGSYLTWFGFSEEGKLSSYDSK 640
WD40-rpts (___________________WD 8_____________
Query 641 GVLRVFTNQYGGSWVPLFSASKERKSDENYWVAGLNANKLFCVICKNPDSYPQVTPKPVLTLLNLSFPLALSDLGAEALE 720
WD40-rpts ______)
Query 721 NEFMMNDMYLKQIHGTMEEMALRGLYDTELDDEAFSIEAAQDRCILRLIASCCNGDKLVRATELVKLLSLEKSVKGAIKL 800
WD40-rpts
Query 801 VTALKLPNLAERFNAILEERLLNETKGIVETTLSRPNCNGSVLPNAPISPKAKTSEFTLPSTLKAPILSAPLFTKKQKSE 880
WD40-rpts
Query 881 GAKFESGKAEDKQTSGVNEISKMHNTNVADATKAAVSLSKVDSNLETNQHFKSSNNQNVKPGGVNQVTSNRPVNPFLKSS 960
WD40-rpts
Query 961 IK 962
WD40-rpts
 8 WD40-repeats found in QUERY=CsaV3_1G003250 (Len=962): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 9-48 6.02 363.32 0.00079 20.0% 50.66 WD 2: Seg 6 53-91 7.62 429.61 0.00010 30.0% 47.80 WD 3: Seg 9 95-133 7.27 415.08 0.00016 25.0% 58.82 WD 4: Seg 13 137-175 9.25 496.80 1.3e-05 35.0% 56.52 WD 5: Seg 17 179-224 5.36 336.28 0.00183 25.0% 54.40 WD 6: Seg 21 228-267 7.69 432.39 9.3e-05 40.0% 58.76 WD 7: Seg 25 268-308 5.83 355.33 0.00101 17.5% 52.87 WD 8: Seg 45 604-647 2.84 232.00 0.04553 30.0% 46.37Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 9-48 -REAHK-AASN-----G-------KPSFCSVLWDQQAYHIVTASSSESAISIHD WD 2 53-91 -STTPK-IIHQ-----H-------REGVTALALSPNSTCLA-SGSMDRSVKLYK WD 3 95-133 -GEFET-NITR-----F-------TLPIRILGFNKSGSLLA-AGGDDDGIKLVN WD 4 137-175 -GSIAR-VLKG-----H-------KGAVTGLAFDPNSEYLA-SVDSIGTVIIWE WD 5 179-224 -GSIIH-NLKG-----IAPNTGSDPSVMNVLGWSPDGETLA-VPGLRNDVVMYD WD 6 228-267 -AEKLF-SLRG----DH-------TQPICFLSWSPNGKYMA-TSSLDRQILIWD WD 7 268-308 VDQKLDIDRQK-----F-------DERICCMAWKPIGNALA-VIDVMGKYGVWE WD 8 604-647 ISNGTQ-LLRGRLPLTP-------GSYLTWFGFSEEGK-LS-SYDSKGVLRVFT WD40 Template TGECLR-TLSG-----H-------TSGVTSVSFSPDGKRLV-SGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |