Input parameters:

  Query = CsaV3_3G033670 (Len=1116)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_3G033670, Len=1116):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFAKRLLQKAIHHSQHAVQRGSLTPEDLKLRVTVHYGIPSTASILAFDSIQRLLALATLDGRIKVIGGGGIEGLLMSPNQ 80  
WD40-rpts                                         (_____________WD 1_____________)  (__________

Query       81 LPYKYLEFITNQGYLVSISNDNEIQVWSLDSRSIACCLQWESNITAFSIVGGSHFMYVGDENGLLSVVKFDPEDEKLMLL 160 
WD40-rpts      _______WD 2________________)  (_________________WD 3________________)           

Query      161 PYRISATSIGDVAGFSFPDDQPSPIIGVLQHSSIGNSVLIAYANGLFLLWDVSRGQVLFVGGGKDLQLNDKLDEPSRRVD 240 
WD40-rpts          (_____________________WD 4____________________)   (_________________WD 5____

Query      241 DNVPIDALENSLADKEISALCWASSNGSILAVGYVDGDILFWKTSITASGRGQQGSPSSKNIVRLQLSSSEKRLPVIVLH 320 
WD40-rpts      ____________)(____________WD 6____________)                                     

Query      321 WSGNSRAPNNCDGQLFIYGGDEIGSEEVLTVLTIEWSPGLEVLRCVGRTELKLHGSFADMILLSSPGSAGDDPKVDLFVL 400 
WD40-rpts                                                                           (__________

Query      401 TNPGKLHFYEKTTLSAIIGKSKTDSKLPVSPLEFPAMIPAAEPPMTTSKFIKLPIGGFSTKILSELASMKLSSTEIQGTS 480 
WD40-rpts      _______WD 7________________)                                        (___________

Query      481 ANWPLTGGVPYPLPTTKDDKVERVYLAGYQDGSIRVLDATHPVFSFICHLNGELEGIKVAGLSAPVSKLDFCCATTSLAV 560 
WD40-rpts      ___________WD 8______________________)                  (_______________WD 9____

Query      561 GNECGLVRVYDLKGGADEKNFHFVTDSRREVHTLPQGKGPQCRAVFSLLNSPVQALQFSKCGVKLGVGYGSGRIAVLDVS 640 
WD40-rpts      __________)              (________________________WD10_______________________)  

Query      641 SSSVLLFTEAISNSSFPIITMIWKEHSAATHGPLESPRHSGAKSAINYAEELLLILTKDAKINVYDGSAGNVINPRSWHL 720 
WD40-rpts                                 (_________________WD11________________)   (__________

Query      721 KKESIAISMYVIESGISVSGSPNEKHTQESSQNPTTKSESNPGSGATGSNLHESQHHSSAEETRSTEKFLDSYVLLCCED 800 
WD40-rpts      ________WD12_________________)                                                  

Query      801 SLRLYSVNSIIQGNNKPTRKVKQSKCCWTTTFKIKERDFGLVLLFQSGVIEIRSLPDLELLKESSLQSILMWNFKANMDK 880 
WD40-rpts                                                    (_____________________WD13________

Query      881 ISSSSEQGQIVLTNGGEVAFLSVLSNENEFRIPESLPSFHDKVLAAAADAAFSVSYYQKKNQLPSAGILGSIVKGFKGGK 960 
WD40-rpts      _____________)                                                                  

Query      961 MTPTMDFCSTRESYCAHLEKIFSKTPFSDSSSPALKNAEELTIDDIEIDDEPPAAASTSSEEVKEEKRTERQRLFGDGND 1040
WD40-rpts                                                                                      

Query     1041 DWKPRTRTTEEILTTYKFSGDASLAAAHARNKLMERQEKLEKLSKRTEELRNGAEDFASLANELVKTMEKRKWWHI 1116
WD40-rpts                                                                                  

13 WD40-repeats found in QUERY=CsaV3_3G033670 (Len=1116):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    36-67       4.19  287.73  0.00823       22.5%     42.41
  WD 2:  Seg  5    70-108      5.75  352.15  0.00112       27.5%     56.91
  WD 3:  Seg  9   111-149      4.37  295.10  0.00655       17.5%     56.14
  WD 4:  Seg 15   165-211      4.25  290.15  0.00763       17.5%     44.75
  WD 5:  Seg 18   215-253      4.88  316.15  0.00341       12.5%     12.15
  WD 6:  Seg 20   254-283      3.47  257.98  0.02059       20.0%     43.69
  WD 7:  Seg 29   390-428      2.90  234.33  0.04242        7.5%     12.81
  WD 8:  Seg 33   469-518      4.96  319.47  0.00308       17.5%     24.87
  WD 9:  Seg 36   537-571      5.65  348.17  0.00126       22.5%     49.73
  WD10:  Seg 40   586-638      5.98  361.51  0.00084       32.5%     54.13
  WD11:  Seg 46   668-706      5.09  324.82  0.00261       15.0%     18.94
  WD12:  Seg 48   710-750      3.12  243.56  0.03202       17.5%      4.84
  WD13:  Seg 53   847-894      4.54  302.10  0.00527       17.5%     31.60

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   36-67     ---------------------Y----------G------I--------PSTASILAFD--S-IQRLLALATLDGRIKVIG
   WD 2   70-108    -G-------------IEGLLMS----------P------N--------QLPYKYLEFI--T-NQGYLVSISNDNEIQVWS
   WD 3  111-149    -S-------------RSIACCL----------Q------W--------ESNITAFSIV--G-GSHFMYVGDENGLLSVVK
   WD 4  165-211    SA-------------TSIGDVA----------GFSFPDDQ--------PSPIIGVLQH--SSIGNSVLIAYANGLFLLWD
   WD 5  215-253    -G-------------QVLFVGG----------G------K--------DLQLNDKLDE--P-SRRVDDNVPIDALENSLA
   WD 6  254-283    ---------------------------------------D--------KEISALCWAS--S-NGSILAVGYVDGDILFWK
   WD 7  390-428    -G-------------DDPKVDL----------F------V--------LTNPGKLHFY--E-KTTLSAIIGKSKTDSKLP
   WD 8  469-518    MK-------------LSSTEIQGTSANWPLTGG------V--------PYPLPTTKDD--K-VERVYLAGYQDGSIRVLD
   WD 9  537-571    ------------------IKVA----------G------L--------SAPVSKLDFC--C-ATTSLAVGNECGLVRVYD
   WD10  586-638    DSRREVHTLPQGKGPQCRAVFS----------L------L--------NSPVQALQFS--K-CGVKLGVGYGSGRIAVLD
   WD11  668-706    -A-------------ATHGPLE----------S------P--------RHSGAKSAIN--Y-AEELLLILTKDAKINVYD
   WD12  710-750    -G-------------NVINPRS----------W------H--------LKKESIAISMYVI-ESGISVSGSPNEKHTQES
   WD13  847-894    SG-------------VIEIRSL----------P------DLELLKESSLQSILMWNFK--A-NMDKISSSSEQGQIVLTN

   WD40 Template    TG-------------ECLRTLS----------G------H--------TSGVTSVSFS--P-DGKRLVSGSEDGTIKVWD