JobID: EGZUH1659514117 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CsaV3_2G004410 (Len=757)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_2G004410, Len=757):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHRVGSAGNTSNSSRPRKEKRLTYVLSDANDSKHSAGINCLAVPKSSIDGCDFLFTGSRDGTLKRWSLAEDVASCSATFE 80  
WD40-rpts                           (____________________WD 1____________________)     (_______

Query       81 SHVDWVNDAVLVGNNRLVSCSSDGTVKTWNSLSDGGCTKTLRQHSDYVTCLAAAEKNSNVVASGGLGGEVFIWDLEAAYA 160 
WD40-rpts      _________WD 2________________)    (_________________WD 3_________________)      

Query      161 PSAKSNDATDDECSNGIIASGNSLPVTSLRTISSSNNISTHPNQSHGYVPIAAKGHKESVYALAMNDSGTLLVSGGTEKV 240 
WD40-rpts       (__________________WD 4__________________)   (_________________WD 5____________

Query      241 VRVWDPRTGSKTMKLRGHTDNIRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPSFSYVYSGG 320 
WD40-rpts      ____)   (_________________WD 6________________)(__________________WD 7__________

Query      321 RDLSLYITDLSTRESLLLCTGEYPIQQLAIHDENIWVATTDSSVHRWPAEGRNPQKVFERGGSFLAGNLSFSRARASLEG 400 
WD40-rpts      ________)   (_______________WD 8_______________)                           (____

Query      401 STPVPVYKEPTFTISGAPAIVQHEILNNRRHILTKDAAGSVKLWEVTRGIVIEDYGKVSYEEKKEELFEMVSIPAWFTVD 480 
WD40-rpts      __________________WD 9______________________)                                   

Query      481 TRLGSLSVHLDTPQCFSAEMYSADLNITGKPEDDKVNLARETLKGLMAHWFAKRKQRFGSQASANGDVLSAKDTSARSLS 560 
WD40-rpts                            (___________________________WD10__________________________

Query      561 HSRLEADGNAENDSMVYPPFEFSTVSPPSIITEGSQGGPWRRKITELDGTEDEKDFPWWCLDCVLNNRLPPRENTKCSFY 640 
WD40-rpts      _)                                                                              

Query      641 LHPCEGSSIQILTQGKLSAPRILRVHKVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEI 720 
WD40-rpts                                                                                      

Query      721 LCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757 
WD40-rpts

10 WD40-repeats found in QUERY=CsaV3_2G004410 (Len=757):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-67       6.95  401.56  0.00024       30.0%     44.11
  WD 2:  Seg  6    73-110      7.73  433.81  8.9e-05       35.0%     49.01
  WD 3:  Seg 10   115-154      7.79  436.66  8.1e-05       30.0%     57.07
  WD 4:  Seg 14   162-203      4.39  296.16  0.00634       10.0%     28.20
  WD 5:  Seg 17   207-245      9.04  488.27  1.6e-05       30.0%     53.93
  WD 6:  Seg 21   249-287      9.58  510.36  8.2e-06       32.5%     56.15
  WD 7:  Seg 25   288-329      8.40  461.83  3.7e-05       25.0%     59.78
  WD 8:  Seg 29   333-368      4.05  282.00  0.00982       12.5%     51.36
  WD 9:  Seg 35   396-445      4.88  316.40  0.00339       20.0%     50.68
  WD10:  Seg 44   503-562      4.05  282.13  0.00978       10.0%      4.96

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-67     LT-----------YVLS------DANDS------------KHSAG--INCLAVP-KSSIDGCDFLFTGSRDGTLKRWS
   WD 2   73-110    -A-----------SCSA--------TFE------------SHVDW--VNDAVLV-GNN-----RLVSCSSDGTVKTWN
   WD 3  115-154    -G-----------GCTK--------TLR------------QHSDY--VTCLAAAEKNS----NVVASGGLGGEVFIWD
   WD 4  162-203    SA-----------KSND--------ATD------------DECSNGIIASGNSL-PVT----SLRTISSSNNISTHPN
   WD 5  207-245    -G-----------YVPI--------AAK------------GHKES--VYALAMN-DSG----TLLVSGGTEKVVRVWD
   WD 6  249-287    -G-----------SKTM--------KLR------------GHTDN--IRALLLD-STG----RFCLSGSSDSMIRLWD
   WD 7  288-329    LG---------QQRCVH--------SYA------------VHTDS--VWALAST-PSF----SYVYSGGRDLSLYITD
   WD 8  333-368    -R-----------ESLL--------LCT------------GEYP---IQQLAIH-DEN------IWVATTDSSVHRWP
   WD 9  396-445    ASLEGSTPVPVYKEPTF--------TIS------------GAPAI--V-QHEIL-NNR----RHILTKDAAGSVKLWE
   WD10  503-562    AD-----------LNITGKPEDDKVNLARETLKGLMAHWFAKRKQ--RFGSQAS-ANG----DVLSAKDTSARSLSHS

   WD40 Template    TG-----------ECLR--------TLS------------GHTSG--VTSVSFS-PDG----KRLVSGSEDGTIKVWD