Input parameters:

  Query = gi_11023_emb_CAA43707.1_ (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_11023_emb_CAA43707.1_, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKVVRSSKYRHVFAAQPKKEECYQNLKVTKSAWDSNYVAANTRYFGVIWDAAGGGSFAVIPHEASGKTTSVPLFNGHKS 80  
WD40-rpts                                                                       (______________

Query       81 AVLDIAFHPFNENLVGSVSEDCNICIWGIPEGGLTDSISTPLQTLSGHKRKVGTISFGPVADNVAVTSSGDFLVKTWDVE 160 
WD40-rpts      _____WD 1__________________)          (_________________WD 2_________________)  

Query      161 QGKNLTTVEGHSDMITSCEWNHNGSQIVTTCKDKKARVFDPRTNSIVNEVVCHQGVKNSRAIFAKDKVITVGFSKTSERE 240 
WD40-rpts       (_________________WD 3________________)   (__________________WD 4______________

Query      241 LHIYDPRAFTTPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRYYELVDESPYIHFLSEFKSATPQRGLCFLPKRC 320 
WD40-rpts      ____)      (_________________WD 5________________)    (__________________WD 6___

Query      321 LNTSECEIARGLKVTPFTVEPISFRVPRKSDIFQGDIYPDTYAGEPSLTAEQWVSGTNAEPKTVSLAGGFVKKASAVEFK 400 
WD40-rpts      _______________)                                                                

Query      401 PVVQVQEGPKNEKELREEYEKLKIRVAYLESEIVKKDAKIKELTN 445 
WD40-rpts                                                   

6 WD40-repeats found in QUERY=gi_11023_emb_CAA43707.1_ (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    66-108      8.07  447.87  5.7e-05       35.0%     53.57
  WD 2:  Seg 11   119-158      7.64  430.13  9.9e-05       40.0%     51.25
  WD 3:  Seg 15   162-200      9.44  504.51  9.9e-06       30.0%     55.48
  WD 4:  Seg 19   204-245      6.06  364.98  0.00075       12.5%     51.37
  WD 5:  Seg 23   252-290      6.35  376.94  0.00052       10.0%     54.14
  WD 6:  Seg 27   295-336      3.06  240.87  0.03477       22.5%     41.51

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   66-108    SGKTTSVPLFNGHKSA--VLDIAFHPFNEN-LVGSV---SE-DCNICIWG
   WD 2  119-158    -ST--PLQTLSGHKRK--VGTISFGPVADNVA-VTS---SG-DFLVKTWD
   WD 3  162-200    -GK--NLTTVEGHSDM--ITSCEWNHNGSQ-I-VTT---CK-DKKARVFD
   WD 4  204-245    -NS--IVNEVVCHQGV--KNSRAIFAKDKV-I-TVGFSKTS-ERELHIYD
   WD 5  252-290    -PL--SAQVVDSASGL--LMPFYDADNSIL-Y-LAG---KG-DGNIRYYE
   WD 6  295-336    -SP--YIHFLSEFKSATPQRGLCFLPKRCL-N-TSE---CEIARGLKVTP

   WD40 Template    TGE--CLRTLSGHTSG--VTSVSFSPDGKR-L-VSG---SE-DGTIKVWD