Input parameters:

  Query = CmaCh19G006610 (Len=377)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh19G006610, Len=377):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVSELKERHVAAIETVNSLKERLKQKRHSLLDTDVAGYVRSLGKNPVCFGATDLVCCRTLQGHTGKVYSLDWTSERNRI 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 VSASQDGRLIVWNALTSQKTHAIKLPCPWVMTCAFSPSGQSVAGGGLDSVCSIFNLNSPTDRDGNLQVSRTLSGHKGYIS 160 
WD40-rpts      ____________)   (_________________WD 2________________)(______________________WD

Query      161 SCQYVPDEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHAADVLSVSISGSNSRTFISGSCDATARLWDTRVASRA 240 
WD40-rpts       3______________________)          (________________WD 4________________)    (__

Query      241 VQTFHGHEGDVNAVKFFSDGNRFGTGSDDGTCRLFDIRTGHELQVYHQLHSDNTNSHVTSIAFSISGRLLFAGYKNGDCY 320 
WD40-rpts      _______________WD 5________________)           (_______________WD 6_____________

Query      321 VWDTLLAKMVLNLGTLQNSHEGRISCLGLSADGSALCTGSWDSNLKIWAFGGHRKVT 377 
WD40-rpts      __)   (___________________WD 7__________________)        

7 WD40-repeats found in QUERY=CmaCh19G006610 (Len=377):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    55-93      10.28  539.42  3.3e-06       42.5%     57.17
  WD 2:  Seg  8    97-135      8.96  484.94  1.8e-05       17.5%     56.51
  WD 3:  Seg 12   136-185      8.33  458.70  4.1e-05       40.0%     52.90
  WD 4:  Seg 17   196-233      8.23  454.48  4.7e-05       42.5%     44.63
  WD 5:  Seg 20   238-276     10.06  530.11  4.5e-06       37.5%     48.94
  WD 6:  Seg 25   288-323      8.33  458.71  4.1e-05       32.5%     46.46
  WD 7:  Seg 28   327-369      8.52  466.51  3.2e-05       27.5%     57.56

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-93     -L---------VCCRTL----QGHTGKVYSLDWT-SER-NRIVSASQDGRLIVWN
   WD 2   97-135    -S---------QKTHAI----KLPCPWVMTCAFS-PSG-QSVAGGGLDSVCSIFN
   WD 3  136-185    LNSPTDRDGNLQVSRTL----SGHKGYISSCQYV-PDEDTHLITGSGDQTCVLWD
   WD 4  196-233    GG---------E---FQ----SGHAADVLSVSISGSNS-RTFISGSCDATARLWD
   WD 5  238-276    -S---------RAVQTF----HGHEGDVNAVKFF-SDG-NRFGTGSDDGTCRLFD
   WD 6  288-323    -------------QLHS----DNTNSHVTSIAFS-ISG-RLLFAGYKNGDCYVWD
   WD 7  327-369    -A---------KMVLNLGTLQNSHEGRISCLGLS-ADG-SALCTGSWDSNLKIWA

   WD40 Template    TG---------ECLRTL----SGHTSGVTSVSFS-PDG-KRLVSGSEDGTIKVWD