Input parameters:

  Query = CsaV3_1G031140 (Len=353)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G031140, Len=353):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDKKRVAIPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATGS 80  
WD40-rpts          (___________________WD 1__________________)   (_________________WD 2________

Query       81 ADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTGGLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTI 160 
WD40-rpts      ________)   (________________WD 3________________)(___________________WD 4______

Query      161 LSSCTDMGGVRLWDVRSGQIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240 
WD40-rpts      _____________)   (________________WD 5_______________)(__________________WD 6___

Query      241 MKFIAGGEDMWIHVFDFHTGDEIACNKGHHGPVHCLRFAPGGESYASGSEDGTIRIWQTGPLTHDDSDESALVNGSIGKV 320 
WD40-rpts      _______________)   (_________________WD 7________________)    (_________________

Query      321 KVSADEVSRKIEGFNIADEGKAREKEKEETGNE 353 
WD40-rpts      WD 8_________________)           

8 WD40-repeats found in QUERY=CsaV3_1G031140 (Len=353):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-47       8.02  445.75  6.1e-05       27.5%     54.99
  WD 2:  Seg  5    51-89       9.97  526.31  5.0e-06       35.0%     55.58
  WD 3:  Seg  9    93-130      8.10  449.35  5.5e-05       27.5%     55.29
  WD 4:  Seg 13   131-174      6.99  403.48  0.00023       22.5%     52.58
  WD 5:  Seg 17   178-214      7.20  412.16  0.00017       35.0%     53.37
  WD 6:  Seg 21   215-256      6.43  380.13  0.00047       30.0%     56.12
  WD 7:  Seg 25   260-298     10.27  538.78  3.4e-06       40.0%     57.47
  WD 8:  Seg 29   303-342      3.44  256.61  0.02147       10.0%      4.54

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-47     RVA---IPLVCHGHSRPVVDLFY-SPVTPD-GFFLISASKDSNPMLRN
   WD 2   51-89     -GD---WIGTFEGHKGAVWSCCL-DT---N-ALRAATGSADFSAKVWD
   WD 3   93-130    -GD---VLHSF-EHKHIVRACSF-SE---D-THLLLTGGLEKVLRIYD
   WD 4  131-174    LNRPDAPPREVDKSPGSVRTVTWLHS---D-QTILSSCTDMGGVRLWD
   WD 5  178-214    -GQ---IVQTLETKSS-VTSAEV-SQ---D-GRYITTAD-GSTVKFWD
   WD 6  215-256    ANH--FGLVKSYNMPCTVESASL-EP---KYGMKFIAGGEDMWIHVFD
   WD 7  260-298    -GD---EIACNKGHHGPVHCLRF-AP---G-GESYASGSEDGTIRIWQ
   WD 8  303-342    THD---DSDESALVNGSIGKVKV-SA---D-EVSRKIEGFNIADEGKA

   WD40 Template    TGE---CLRTLSGHTSGVTSVSF-SP---D-GKRLVSGSEDGTIKVWD