Input parameters:

  Query = MELO3C018988 (Len=333)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (MELO3C018988, Len=333):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENAASRSEFLATYDSPHPLYAMAISSPHAHSLNFSSRIALGSFVEEYNNRVDIVSFDPDSVSIKTNPSLSFEHPYPPTK 80  
WD40-rpts           (_________________WD 1_________________)                    (______________

Query       81 LMFNPSPLSSLLASSGDSLRLWKVGDSSIEPLSLLNNSKTSEFCAPLTSFDWNEVELKRIGTSSIDTTCTIWDIEKSVVE 160 
WD40-rpts      __WD 2________________)           (_________________WD 3________________)   (___

Query      161 TQFIAHDKEVYDIAWGEARVFASVSADGSVRIFDMRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVIL 240 
WD40-rpts      _____________WD 4________________)      (__________________WD 5_________________

Query      241 DIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNGIDPMSMYSAACEINQLQWSAAQPDWI 320 
WD40-rpts      )    (_________________WD 6_________________)        (_________________WD 7_____

Query      321 ALAFSNKMQLLKV 333 
WD40-rpts      ___________) 

7 WD40-repeats found in QUERY=MELO3C018988 (Len=333):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-45       3.66  265.93  0.01612        5.0%     23.73
  WD 2:  Seg  6    66-103      7.23  413.38  0.00017       20.0%     46.59
  WD 3:  Seg 11   115-153      6.85  397.82  0.00027       25.0%     43.33
  WD 4:  Seg 14   157-194      7.04  405.31  0.00021       17.5%     54.72
  WD 5:  Seg 18   201-241      4.65  306.85  0.00455       10.0%     52.76
  WD 6:  Seg 22   246-285      7.59  428.24  0.00011       20.0%     48.33
  WD 7:  Seg 26   294-332      5.70  349.96  0.00120        5.0%     42.44

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     SRSEFLATYDSPHPLYAMAISS-PHAHSLNFSSR-IALGSFV
   WD 2   66-103    TNPSL--SFEHPYPPTKLMFNP-SPLSSLLASSG-DSLRLWK
   WD 3  115-153    LNN--SKTSEFCAPLTSFDWNEVELKRIGTSSID-TTCTIWD
   WD 4  157-194    -SVVETQFIAHDKEVYDIAWG--EARVFASVSAD-GSVRIFD
   WD 5  201-241    -STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKIVILD
   WD 6  246-285    -SVPVAELERHHSSVNAIAWAPRSCRHICSAGDD-KQALIWE
   WD 7  294-332    -GIDPMSMYSAACEINQLQWSA-AQPDWIALAFS-NKMQLLK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSED-GTIKVWD