WDRR: WD40 Repeat Recognition
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| JobID: E90PM1488531758 Submitted: 2017-03-03 17:02:38 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 250719386 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = BmWD001 (Len=902) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (BmWD001, Len=902): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPSTHLNLREDDVVRLSLEFLHNRDLHITQLSLERETGVINGNYADDVLFLRQLILDGQWDDVLEFIQPLSALKTFEANK 80
WD40-rpts
Query 81 FNYAILRHKYIELLCIRSEIKAYNNVENIVEEVVKVLSELEKIAPSKEEYSNLCLLLTLPSITDHAQFKKWNPSNARVQC 160
WD40-rpts
Query 161 FREVYPLVEQFLPCDKKSSSGTISKCAKNDRLMQLLIKGILYESCVNYCQAKATGSKEAQSNDVTFSRLLDGSGFDESDL 240
WD40-rpts
Query 241 SLLSWLQSIPAETFSVPFEQRMLNVDVEKLERPSLHTSWTEHMLVTPIKPRTFPHLAMPFRRPRSAADAMTRSLRPLPDG 320
WD40-rpts
Query 321 APRHPALMALSAIDYGPSSSCFAGFHLTGIKGSKLMNTSVDRLFDSPTGDGIFEDLNDTLKPIAEQVKLSEDSPPAKLNE 400
WD40-rpts
Query 401 GSSIGASNATTPEHRAQDYSASTSVSNTAASTERSSLAERAPPRVEHAVVHATDGDFRRDLLKEYQIQKQRECDDYIRNL 480
WD40-rpts
Query 481 CSSESRQPKSMEQVTDAPAGFSTAAKSQQQFANRPPIEEKPREQMLYGRNQRSEISESSDVGEPSTMQTRNGGPQSSTPV 560
WD40-rpts (_________________WD 1_____
Query 561 PGPTAVGIESSDSRPTFKPVTVLEDLQAVRCAEFHPNGKLYAVGSNTKTLRICSYPKIEDVKDNSAPTAPTVLLKRTKHH 640
WD40-rpts ___________) (_________________WD 2________________) (_________
Query 641 KGSIYCLAWSPAGDLLATGSNDKTVKLMAFNTHACNLEGQEVELTVHDGTVRDVCFIEDTTNKTSLLVSGGAGDCKIYVT 720
WD40-rpts ________WD 3________________)(_______________________WD 4_______________________
Query 721 DCIIGKTFQALSGHSGHVLSLYNWGGAMFVSGSQDKTVRFWDLRTGGCVNIISPPAGQPSKGSAVASLAVDPSGRLLVCG 800
WD40-rpts ) (________________WD 5________________) (________________WD 6_______
Query 801 HDDGTCALHDVRGSRALQRFTPHSSDVRSVRFSPGAYCLLTAGYDGRVVLADLQGDLTCPLPSVPVARHPDKVISARWHP 880
WD40-rpts _________) (_________________WD 7________________) (_________________WD
Query 881 DDFSFLSTSADKTAVLWTIPPV 902
WD40-rpts 8________________)
 8 WD40-repeats found in QUERY=BmWD001 (Len=902): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 3 534-572 6.73 392.63 0.00032 17.5% 6.36 WD 2: Seg 4 576-614 7.91 441.33 7.0e-05 22.5% 51.41 WD 3: Seg 8 631-669 8.13 450.39 5.3e-05 27.5% 47.58 WD 4: Seg 11 670-721 6.11 367.19 0.00070 27.5% 51.24 WD 5: Seg 15 725-762 8.83 479.31 2.2e-05 40.0% 54.40 WD 6: Seg 20 773-810 8.35 459.66 4.0e-05 30.0% 42.32 WD 7: Seg 23 814-852 9.48 506.42 9.3e-06 32.5% 58.39 WD 8: Seg 26 860-898 7.30 416.09 0.00015 25.0% 41.10Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 534-572 -EI-------SESSDVGEPSTMQTRNGGPQSS-----TPVPGPTAVGIESSD WD 2 576-614 -TF-------KPVTVLEDLQAVRCAEFHPNGK-----LYAVGSNTKTLRICS WD 3 631-669 -TV-------LLKRTKHHKGSIYCLAWSPAGD-----LLATGSNDKTVKLMA WD 4 670-721 FNTHACNLEGQEVELTVHDGTVRDVCFIEDTTNKTSLLVSGGAGDCKIYVTD WD 5 725-762 -GK-------TFQALSGHSGHVLSL-YNWGGA-----MFVSGSQDKTVRFWD WD 6 773-810 SPP-------A--GQPSKGSAVASLAVDPSGR-----LLVCGHDDGTCALHD WD 7 814-852 -SR-------ALQRFTPHSSDVRSVRFSPGAY-----CLLTAGYDGRVVLAD WD 8 860-898 -PL-------PSVPVARHPDKVISARWHPDDF-----SFLSTSADKTAVLWT WD40 Template TGE-------CLRTLSGHTSGVTSVSFSPDGK-----RLVSGSEDGTIKVWD |
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