WDRR: WD40 Repeat Recognition
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| JobID: E7AGJ1659505652 Submitted: 2022-08-03 13:47:32 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79744807 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh19G006860 (Len=1217) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh19G006860, Len=1217): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLTKFETKSNRVKGLSFHCKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNY 80
WD40-rpts (_______________WD 1______________) (_________________WD 2________________)
Query 81 KTHRCLFTLLGHLDYIRTVQFHHESPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKDDLVVSASLDQTVR 160
WD40-rpts (_________________WD 3________________) (_________________WD 4______________
Query 161 VWDISALTKKSVSPADDILRLSQMNTDLFGGVDAVVKYVLDGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE 240
WD40-rpts __) (_______________________WD 5_______________________)(_______
Query 241 VDTLRGHMNNVSSVMFHAKQDLIISNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLGR 320
WD40-rpts ____________WD 6___________________) (________________WD 7________________)
Query 321 ERPAFVISGDTLLYTKDRFLRFYEFSTQRDTQVIPIRRPGSINSNQSPRTIVYSPTENTVLICSDLDGGSYELYTIPHES 400
WD40-rpts
Query 401 IGRGDSLQDAKKGVGGSAVFVARNRFAVLDKSNMQVLIKNIKNEVVKKSILPVAADAIFYAGTGNLLCRAEDRVVLFDLQ 480
WD40-rpts (_
Query 481 QRVVLGDLQTPFIKYVVWSNDMESVALLSKHVIIITSKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDS 560
WD40-rpts ________________WD 8_________________)
Query 561 GIIRTLDVPIYLTKVSGNTIFCLDRDGKNKTIVIDATEYIFKLSLLKKKFDHVMSMIKNSQLCGQAMISYLQQKGFPEVA 640
WD40-rpts
Query 641 LHFVKDERTRFNLALESGSIQIAVASATALDEKDHWYRLGVEALRQGNTGIVEYAYQRTKNFERLSFLYLITGNINKLSK 720
WD40-rpts
Query 721 MLKIAEVKNDVMGQFHNALYLGDVRERVKILENVGHLPLAYVTASVHGLHDVAERLAAELGDDVPALPEGKVPSLLMPPS 800
WD40-rpts
Query 801 PVMCGGDWPLLRVMKGIFEGGLDTVGRGVADEVEEAADGDWGEELEMVEVDGLPNGDVTAILEDGEVAEENEEDGGWDLE 880
WD40-rpts
Query 881 DLELPPEPETSKASAGARSFFVAPTPGMPVSQIWVQRSSLAAEHAAAGNFETAMRLLNRQLGIKNFAPLKSMFLNLHGGS 960
WD40-rpts
Query 961 HSHLCAFSSAPVITLAVERGWSESASPNVRGPPALIFNFSQLEEKLKAGYRATTTGKFSEALKLFLSIIHTIPLIIVESK 1040
WD40-rpts
Query 1041 REVDEVKELIIIVKEYILGLQMELKRREVKDNPIRQQELAAYFTHCNLQLPHLRLALQNAMTVCFKAKNLATAGNFARRL 1120
WD40-rpts
Query 1121 LETNPIVENQAKAARQVLQAAERNMTDASKLNYDFRNPFVICGATHVPIYRGQKDVSCPYCSTRFVPSQEGQLCTVCDLA 1200
WD40-rpts
Query 1201 AVGADASGLLCSSSQIR 1217
WD40-rpts
 8 WD40-repeats found in QUERY=CmaCh19G006860 (Len=1217): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-37 4.54 302.18 0.00526 20.0% 49.45 WD 2: Seg 4 41-79 7.35 418.35 0.00014 32.5% 57.16 WD 3: Seg 8 83-121 8.57 468.65 3.0e-05 37.5% 57.18 WD 4: Seg 12 125-163 8.88 481.61 2.0e-05 40.0% 54.96 WD 5: Seg 16 181-232 7.56 426.82 0.00011 35.0% 55.09 WD 6: Seg 20 233-276 8.46 464.08 3.5e-05 40.0% 55.20 WD 7: Seg 24 280-317 3.08 242.05 0.03354 15.0% 56.99 WD 8: Seg 42 479-518 3.05 240.84 0.03480 15.0% 42.31Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-37 T---------------------KFETKSNRVKGLSFHCKRPWILASLHSGVIQLWD WD 2 41-79 -GT------------L----IDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWN WD 3 83-121 -HR------------C----LFTLLGHLDYIRTVQFHHESPWIVSASDDQTIRIWN WD 4 125-163 -RT------------C----ISVLTGHNHYVMCASFHPKDDLVVSASLDQTVRVWD WD 5 181-232 LSQMNTDLFGGVDAVV----KYVLDGHDRGVNWASFHPTLPLIVSGADDRQVKLWR WD 6 233-276 MND------------TKAWEVDTLRGHMNNVSSVMFHAKQDLIISNSEDKSIRVWD WD 7 280-317 -RT------------G----VQTFRREHDRFWILAAHPEMNLLAAGH-DSGMIVFK WD 8 479-518 LQQ------------R----VVLGDLQTPFIKYVVWSNDMESVALLSKHVIIITSK WD40 Template TGE------------C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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