Input parameters:

  Query = CmaCh01G019490 (Len=226)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh01G019490, Len=226):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKRPPPDPVAVLRGHRASVTDVSFHPSEPLLFSGSADGELRIWDTAQHRTVSSAWVHSAAHGIISIACSRSIGTNRVVS 80  
WD40-rpts           (_________________WD 1_________________)   (___________________WD 2________

Query       81 QGRDGTVKCWDIDDRALSRVPSVTINTNAYHFCKLSLVKQPSDFSRHDGGPKCSNDIDQNPVEVETLSCSGEKTQENSTE 160 
WD40-rpts      __________)(______________WD 3______________)(______________WD 4______________)(

Query      161 QACISEGSFKSMVHRTDLSMWLLPGSNLQRFVEIWDLNSGERLLRLPPNCEGDCPNISTKERGWFH 226 
WD40-rpts      ________________WD 5_______________)                              

5 WD40-repeats found in QUERY=CmaCh01G019490 (Len=226):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-45      10.81  561.06  1.7e-06       42.5%     53.95
  WD 2:  Seg  5    49-91       8.10  449.43  5.5e-05       30.0%     51.74
  WD 3:  Seg  9    92-125      4.35  294.30  0.00671       12.5%      9.93
  WD 4:  Seg 12   126-159      6.11  367.26  0.00070       12.5%     21.29
  WD 5:  Seg 15   160-196      5.87  357.22  0.00095       12.5%     48.48

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     PPDPVAVLRGHRASVT----DVSFHPSEPLLF-SGSADGELRIWD
   WD 2   49-91     -HRTVSSAWVHSAAHGIISIACSRSIGTNRVV-SQGRDGTVKCWD
   WD 3   92-125    ------IDDRALSRVP----SVTINTNAYHFC-KLSLVKQPSDFS
   WD 4  126-159    ------RHDGGPKCSN----DIDQNPVEVETL-SCSGEKTQENST
   WD 5  160-196    ----EQACISEGSFKS----MVHRTDLSMWLLPGSNLQRFVEIWD

   WD40 Template    TGECLRTLSGHTSGVT----SVSFSPDGKRLV-SGSEDGTIKVWD