WDRR: WD40 Repeat Recognition
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| JobID: E5ONP1471474534 Submitted: 2016-08-18 06:55:34 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 267776665 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = TPR3 (Len=1134) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (TPR3, Len=1134): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGFTKVDDNRYSMKIFFEIRKQK 80
WD40-rpts
Query 81 YLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLTLQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDK 160
WD40-rpts
Query 161 LMFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240
WD40-rpts
Query 241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTY 320
WD40-rpts
Query 321 PAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQA 400
WD40-rpts (__________________WD 1_________________) (_________
Query 401 LIAKETPISVTRVAWSPDGNFIGKLPVMHCWILIVCCLWSLVSVSYCAGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGA 480
WD40-rpts ___________WD 2___________________) (__________________
Query 481 VNDLAFANPNRQLCVITCGDDKLIKVWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 560
WD40-rpts ___WD 3____________________) (__________________WD 4_________________) (_____
Query 561 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWD 640
WD40-rpts ______________WD 5__________________) (_________________WD 6_________________)
Query 641 MNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFKAVPGAPVASV 720
WD40-rpts (___________________WD 7___________________)(_________________WD 8______________
Query 721 NCKVERGSPVRHSQMLNGVDPSKSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGSN 800
WD40-rpts ___) (_______________WD 9______________) (_________________WD10__________
Query 801 GIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVM 880
WD40-rpts ______) (______________WD11______________) (___
Query 881 TTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSID 960
WD40-rpts ______________WD12_________________) (_________________WD13________________)
Query 961 TWEKRKSVAIQMPAGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTT 1040
WD40-rpts (___________________WD14___________________)(____________________WD15__________
Query 1041 FRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLSPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINS 1120
WD40-rpts _________) (__________________WD16_________________)
Query 1121 PSTTSNQTPEQLQR 1134
WD40-rpts
 16 WD40-repeats found in QUERY=TPR3 (Len=1134): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 334-374 5.73 351.22 0.00115 35.0% 55.37 WD 2: Seg 13 391-435 6.09 366.29 0.00072 20.0% 50.94 WD 3: Seg 19 462-508 7.03 405.08 0.00022 25.0% 54.45 WD 4: Seg 23 511-551 7.44 422.11 0.00013 30.0% 56.61 WD 5: Seg 27 555-597 6.06 365.10 0.00075 22.5% 55.92 WD 6: Seg 31 601-640 7.25 414.06 0.00016 30.0% 57.95 WD 7: Seg 35 641-684 6.74 393.09 0.00031 17.5% 56.55 WD 8: Seg 39 685-724 7.83 438.16 7.7e-05 12.5% 46.20 WD 9: Seg 43 726-760 3.36 253.43 0.02368 12.5% 19.65 WD10: Seg 47 769-807 7.13 409.37 0.00019 15.0% 46.56 WD11: Seg 53 840-873 4.23 289.22 0.00786 7.5% 44.86 WD12: Seg 56 877-916 6.88 398.88 0.00026 25.0% 59.22 WD13: Seg 60 920-958 8.76 476.48 2.4e-05 32.5% 58.29 WD14: Seg 64 962-1005 3.81 272.10 0.01333 22.5% 51.36 WD15: Seg 68 1006-1050 6.45 381.29 0.00045 15.0% 51.70 WD16: Seg 73 1061-1101 6.20 370.88 0.00062 17.5% 44.63Multiple sequence alignment of 16 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 334-374 -L-----P----T-----KAALALH------QGSTVTS-M--EFYPMQNTLL--LVGS----ATGEITLWE WD 2 391-435 MS-----N----CSHQFQALIAKET------P-ISVTR-V--AWSP-DGNFI--GKLP----VMHCWILIV WD 3 462-508 FSGPNDLR----Q-----HTEIDAH------V-GAVND-L--AFAN-PNRQLCVITCG----DDKLIKVWD WD 4 511-551 -G-----R----K-----HFTFEGH------D-APVYS-ICPHYKE-NIQFI--FSTA----IDGKIKAWL WD 5 555-597 -L-----G----S-----RVDYDAP------G-KWCTR-M--LYSA-DGTRL--FSCGTSKDGDSFLVEWN WD 6 601-640 -G-----S----I-----KRTYKEF------Q-KKLAGVV--QFDT-SKNHF--LAVG----EDGQIKFWD WD 7 641-684 MN-----NINVLT-----STDAEGG------L-PALPH-L--RFNK-DGNLL--AVTT----ADNGFKILA WD 8 685-724 NP-----A----G-----FRSLRAM------E-TPASE-T--MRTP-VDFKA--VPGA----PVASVNCKV WD 9 726-760 RG------------------SPVRH------S-QMLNG-V--DPSK--SRID--DSTD----KPKSWQLAE WD10 769-807 -Q-----A----T-----LPDTAGS------S-TKVVQ-L--LYTN-SGAGI--LALG----SNGIQRLWK WD11 840-873 V-------------------SGVNL------E-NAAPC-I--ALSK-NDSYV--MSAA-----GGKVSLFN WD12 877-916 -F-----K----V-----MTTFMPP------P-PASTF-L--AFHPQDNNVI--AIGM----EDSTIHIYN WD13 920-958 -D-----E----V-----KSKLKGH------Q-KRITG-L--AFST-ALNIL--VSSG----ADAQICFWS WD14 962-1005 -W-----E----K-----RKSVAIQMPAGKAA-NGDTR-V--QFHV-DQLRI--LVVH-----ETQLAVFD WD15 1006-1050 AS-----K----MECIRQWIPQDSL------S-APISS-A--VYAC-NSQLI--YTTF----RDGNIGVFD WD16 1061-1101 SP-----S----A----YLPQGNQG------L-SPLVV-A--AHPQ-DPNQF--AVGL----NDGSVKMME WD40 Template TG-----E----C-----LRTLSGH------T-SGVTS-V--SFSP-DGKRL--VSGS----EDGTIKVWD |
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