Input parameters:

  Query = CmaCh09G006530 (Len=451)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G006530, Len=451):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENLGNDFLDYLVDDYYDVDNFDDDSFFGDDEAQRNSDAESVDDDFEEDFEMSKSRTDTSALEARNGKDIQGIPWERLHF 80  
WD40-rpts                                                                                      

Query       81 TREKCRETRLKQYKNYENLSRPREDLEKECLQVEMGHAFYNFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVLH 160 
WD40-rpts                                        (_________________WD 1_________________)      

Query      161 WSSLLRRSKEVLNVAKPVVPTLKLPGLMSQPLSRVQISTMAVKENLIVAGGFQGELICKYLNHPEVAFCTKITANDNAIT 240 
WD40-rpts                               (_______________WD 2______________)         (__________

Query      241 NAVDIYRDSTGGTRIMTANNDAKVRIYDAENFSSLGCFPFDWSVNNTSVSPDGKLLAVLGDSPGCLITDANSGRAIGCLQ 320 
WD40-rpts      _______WD 3________________)(__________________WD 4_________________)   (_______

Query      321 GHLDYSFTSAWHPNGHILATGNQDTTCRLWDVRKMSESMAVLKGRMGAIRAVKFSSDGRFVAMAEPADFVHIFDSQSGYI 400 
WD40-rpts      __________WD 5________________)    (_________________WD 6________________)   (__

Query      401 EGQEIDMFGEIAGICFSPDAESLFVGVSDRTYGSLLEFNRRRDNKYLDSMI 451 
WD40-rpts      _______________WD 7_________________)              

7 WD40-repeats found in QUERY=CmaCh09G006530 (Len=451):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   115-154      3.15  244.71  0.03092       12.5%     35.82
  WD 2:  Seg  7   186-220      6.35  376.84  0.00052       15.0%     49.39
  WD 3:  Seg 10   230-268      7.80  437.04  8.0e-05       17.5%     43.35
  WD 4:  Seg 14   269-309      7.38  419.51  0.00014       22.5%     57.84
  WD 5:  Seg 18   313-351     10.06  530.41  4.4e-06       30.0%     53.22
  WD 6:  Seg 22   356-394      9.07  489.20  1.6e-05       22.5%     56.45
  WD 7:  Seg 26   398-437      7.41  420.79  0.00013       22.5%     57.52

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  115-154    MGH-AFYNFQFNTRLVKSTIVHFQLRNLLWATSKHDV-YLMQ
   WD 2  186-220    ------GLMSQPLSRVQISTMAVKENLIVAGGFQGEL-ICKY
   WD 3  230-268    -TK-ITANDNAITNAVDIYRDSTGGTRIMTANNDAKV-RIYD
   WD 4  269-309    AENFSSLGCFPFDWSVNNTSVSPDGKLLAVLGDSPGC-LITD
   WD 5  313-351    -GR-AIGCLQGHLDYSFTSAWHPNGHILATGNQDTTC-RLWD
   WD 6  356-394    -SE-SMAVLKGRMGAIRAVKFSSDGRFVAMAEPADFV-HIFD
   WD 7  398-437    -GY-IEGQEIDMFGEIAGICFSPDAESLFVGVSDRTYGSLLE

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTI-KVWD