Input parameters:

  Query = CsaV3_1G001420 (Len=514)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_1G001420, Len=514):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVGNDSLCAPPQWKFSQVFGERVAGEDIQDVDIISAIGFDKTGDNLAIGDRGGRVIIFERKDGKDTFKNYPTRSKLEQL 80  
WD40-rpts                          (_________________WD 1_________________)                    

Query       81 NLTPACHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKIKWCVSPNGSRFILSTNDKTIKLWKVKEHKVKTVKEMNPNRFV 160 
WD40-rpts                            (_________________WD 2_________________)                  

Query      161 SLENALLAEISFTSEQDKASLSNGCHWNLSENMEMSNVACKDIRGMIADQDNTSWRRCRKVYAHAHDYNINSISNNSDGE 240 
WD40-rpts                        (______________WD 3_____________)(___________________WD 4_____

Query      241 TFISADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEIISSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAILLR 320 
WD40-rpts      _____________)            (_________________WD 5________________)               

Query      321 TEELNRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKCSSPVAVFKIHEHLRPRLCELYDNDSIFDRFECCL 400 
WD40-rpts          (________________WD 6________________)             (____________________WD 7

Query      401 SADGLHFATGSYSNHLRMFSYGSGSSEGITTEVGKFPDRRPHLQITRQATTRRARRSSLSNLTRDFFRHGSEHSSSDGSE 480 
WD40-rpts      ___________________)(____________________WD 8____________________)      (_______

Query      481 TSVDLNSKLLHLAWHPSENLIACAAGSGLFVYYA 514 
WD40-rpts      ___________WD 9__________________)

9 WD40-repeats found in QUERY=CsaV3_1G001420 (Len=514):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-60       8.89  481.90  2.0e-05       12.5%     42.29
  WD 2:  Seg  8   103-142      7.35  418.26  0.00014       22.5%     40.51
  WD 3:  Seg 15   179-211      5.21  330.06  0.00222       12.5%     33.98
  WD 4:  Seg 19   212-254      6.07  365.27  0.00074       25.0%     50.72
  WD 5:  Seg 24   267-305      6.32  375.67  0.00054       22.5%     39.43
  WD 6:  Seg 28   325-362      6.98  402.83  0.00023       22.5%     42.95
  WD 7:  Seg 32   376-420      5.66  348.54  0.00125       15.0%     43.62
  WD 8:  Seg 36   421-466      4.63  306.10  0.00466        7.5%     21.54
  WD 9:  Seg 38   473-514      3.41  255.69  0.02208        7.5%     33.86

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-60     GER------VAG----ED-----IQ--DVDIISAIGFDK-TGDNLAIGDRGGRVIIFE
   WD 2  103-142    FDY------LKS----LE-----IE--EKINKIKWCVSP-NGSRFILSTNDKTIKLWK
   WD 3  179-211    -----------------A-----SL--SNGCHWNLSENM-EMSNVACKDIRGMIADQD
   WD 4  212-254    NTS------WRRCRKVYA-----HA--HDYNINSISNNS-DGETFISAD-DLRINLWN
   WD 5  267-305    --M------KPS----NM-----ED--LTEIISSAEFHPLHCNLLAYSSSRGFIRLVD
   WD 6  325-362    -NR------PKS----FF-----TE--IISSISDIKFSS-DGRFIISRD-YMNLKLWD
   WD 7  376-420    HEH------LRP----RLCELYDND--SIFDRFECCLSA-DGLHFATGSYSNHLRMFS
   WD 8  421-466    YGSGSSEGITTE----VG-----KF--PDRRPHLQITRQ-ATTRRARRSSLSNLTRDF
   WD 9  473-514    HSS------SDG----SE-----TSVDLNSKLLHLAWHP-SENLIACAAGSGLFVYYA

   WD40 Template    TGE------CLR----TL-----SG--HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD