WDRR: WD40 Repeat Recognition
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| JobID: DYTE81659514416 Submitted: 2022-08-03 16:13:36 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79737878 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_3G021770 (Len=638) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_3G021770, Len=638): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MENMQYAEELVREFLVFRGFTSALQSYESELSTDIGKGFQVDRILDLIFSVYIPKFEAEKLVGLLGFFKQCLASSSDNTL 80
WD40-rpts
Query 81 LSTVSKLEVSILRYYMVHAIQSGRTDKVLEFLKIHGNDLLQRTKDWTPWFALPYLKNPKFDPNFRVYFTREWYEALHVSV 160
WD40-rpts
Query 161 RNFFSEVFNGTRIPALLKLSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCNLRSLVNSSPNVMHEENATSSNDAL 240
WD40-rpts (________________________________WD 1_______________________________) (___
Query 241 ETCPPPTTQVGETQLARDGVLAGSDKYIASNEDSSSLLTSRSGDGEVGDSSHSCEDGCQMVNSGEVHVQEDFPEVKVEFQ 320
WD40-rpts ______________WD 2________________)(________________WD 3________________) (___
Query 321 ETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPSSRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWN 400
WD40-rpts ______________WD 4________________) (_________________WD 5_________________)
Query 401 VDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGTSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMC 480
WD40-rpts (__________________WD 6_________________) (_________________
Query 481 FNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFC 560
WD40-rpts WD 7________________) (_________________WD 8________________) (____
Query 561 DSESSLSLRHEMTLDASGKRLLATSNSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSIRVTSIS 638
WD40-rpts _____________WD 9________________) (_________________WD10________________)
 10 WD40-repeats found in QUERY=CsaV3_3G021770 (Len=638): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 165-233 2.88 233.60 0.04338 12.5% 4.72 WD 2: Seg 5 237-275 3.43 256.38 0.02163 17.5% -15.47 WD 3: Seg 7 276-313 7.71 433.09 9.1e-05 20.0% 43.07 WD 4: Seg 11 317-355 10.12 532.87 4.1e-06 37.5% 51.23 WD 5: Seg 15 361-400 6.94 401.23 0.00024 17.5% 50.67 WD 6: Seg 19 404-444 4.51 300.82 0.00549 15.0% 44.18 WD 7: Seg 24 463-501 8.22 454.38 4.7e-05 27.5% 53.43 WD 8: Seg 28 505-543 9.28 497.92 1.2e-05 25.0% 54.93 WD 9: Seg 33 556-594 7.88 440.15 7.3e-05 15.0% 52.29 WD10: Seg 37 598-636 8.88 481.63 2.0e-05 25.0% 56.24Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 165-233 SEVFNGTRIPAL--LKLSSEK-NTVNHLKRDIKQLNLKLAQLQALLEEKEAHLC-NLRSLVNSSPNVMHEENA WD 2 237-275 -NDALETCPPPT--TQVGETQL------------------------------AR-DGVLAGSDKYIASNEDSS WD 3 276-313 --SLLTSRSGDG--EVGDSSHS------------------------------CE-DGCQMVNSGEVHVQEDFP WD 4 317-355 -VEFQETFLGHT--SPISRCRF------------------------------SA-SGNNVASASLDGTVRIWT WD 5 361-400 -PSSRNATIYCG--AEIMSLDW------------------------------ECKSDRLLLIGTADAGIKAWN WD 6 404-444 -KRVVCDLNTTDMFPSVLDIKC------------------------------SP-VESIFVSAAASRGHGTSY WD 7 463-501 -SMTVLPLGKDP--PAITSMCF------------------------------NH-NGKILAAAATDGMIHMFD WD 8 505-543 -CLQITGWPAHD--SAINSILF------------------------------GP-DETSIFTLGSDGKIFEWS WD 9 556-594 -NSRFCDSESSL--SLRHEMTL------------------------------DA-SGKRLLATSNSVRAPIYQ WD10 598-636 -RVGGLKTLPHT--AAITTVDW------------------------------HP-TLPVFLTGSADHSIRVTS WD40 Template TGECLRTLSGHT--SGVTSVSF------------------------------SP-DGKRLVSGSEDGTIKVWD |
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