Input parameters:

  Query = CmaCh12G010470 (Len=1123)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh12G010470, Len=1123):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRESFMILCLFEDFRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVQSGEWEEVEKYLSGYTKVDDNRYSMK 80  
WD40-rpts                                                                                      

Query       81 IFFEIRKQKYLEALDRNDKPKAVEILVSDLKVFSTFNEELFKEITQLLTLTNFRENEQLSKYGDTKAARSIMLIELKKLI 160 
WD40-rpts                                                                                      

Query      161 EANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFMDHTCSPSNGPLAPTTVNLPVAKPAPYAPLGA 240 
WD40-rpts                                                                                      

Query      241 HSPFPPSGAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQANPGMVDYQNPEHEQLIKRLRSAQSVEEVTYPAPR 320 
WD40-rpts                                          (______________________WD 1_________________

Query      321 QQASWSLEDLPRMVALTLHQGSTVTSMDFHPTHHTLLLVGSNNGEVTLWELGIRERLISKPFKLWDMSSRSLAFQAAIVK 400 
WD40-rpts      _____)(___________________WD 2___________________)                     (________

Query      401 DTISVSRVTWSPDGTFVGVAFTRHLVHLYSYNSSNELNQQTEIDAHAGGVNDLAFAHPNKQLCVVTCGEDKLIKVWDIGG 480 
WD40-rpts      _________WD 3________________)        (_________________WD 4________________)  (

Query      481 RKLFTFEGHEAPVYSICPHHKESIQFIFSTALDGKIKAWLYDHMGSRVDYDAPGKWCTRMLYSADGSRLFSCGTSKDGES 560 
WD40-rpts      __________________WD 5_________________)   (___________________WD 6_____________

Query      561 YLVEWNESEGAIKRTYAGFRKKSTGVVQFDTTQNHFLAAGEDSQIKFWDMDNTNVLTYTDAEGGLPSLPCLRFNKEGNLL 640 
WD40-rpts      _____)   (_________________WD 7_________________)(___________________WD 8_______

Query      641 AVTTDNGFKILANAVGMRSLKAIESTTPFEALRSPMESALKVSGTSAVASVSPVNCKVERSSPVRPSIINGVDGLGRNVD 720 
WD40-rpts      ____________)   (_________________WD 9________________)   (___________________WD

Query      721 KPRTVEDAIDKANPWQLAEIVDPANCRLVTLPDNADSTHKVVRLLYTNSGVGLLALGSNGIQKLWKWTRNEQNPSGKATA 800 
WD40-rpts      10___________________)(___________________WD11___________________)              

Query      801 NAVPHHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 880 
WD40-rpts                         (______________WD12_____________)   (_________________WD13___

Query      881 IIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSSSLNILVSSGADSQLCLWSIDTWEKRKSITIHLPAGKAPVGD 960 
WD40-rpts      ______________)   (_________________WD14________________)   (___________________

Query      961 TRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDVLPAPISYAAYSCNSQLVYATFCDGNVGVFDADTLRLRCRIA 1040
WD40-rpts      WD15___________________)   (__________________WD16__________________)   (_______

Query     1041 PSVYLPSAVLNSSQAAYPLVVATHPIEPNQFAIGLTDGSVKVIEPTESEGKWGVSPLMDNGIPNGRTASSSTTSNHTPEQ 1120
WD40-rpts      ________________WD17_______________________)                                    

Query     1121 IQR 1123
WD40-rpts         

17 WD40-repeats found in QUERY=CmaCh12G010470 (Len=1123):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   277-326      4.05  281.96  0.00983       10.0%     30.69
  WD 2:  Seg  8   327-370      6.63  388.45  0.00036       27.5%     58.04
  WD 3:  Seg 14   392-430      7.39  419.75  0.00014       17.5%     51.55
  WD 4:  Seg 19   439-477      7.39  419.86  0.00014       35.0%     50.05
  WD 5:  Seg 23   480-520      7.38  419.37  0.00014       32.5%     56.46
  WD 6:  Seg 27   524-566      6.28  374.09  0.00057       20.0%     52.65
  WD 7:  Seg 31   570-609      7.56  427.05  0.00011       30.0%     57.52
  WD 8:  Seg 35   610-653      6.62  388.20  0.00036       12.5%     53.69
  WD 9:  Seg 39   657-695      3.40  255.02  0.02255       10.0%     24.80
  WD10:  Seg 43   699-742      5.75  352.04  0.00112       17.5%     36.10
  WD11:  Seg 46   743-786      7.53  425.64  0.00011       22.5%     43.12
  WD12:  Seg 52   820-852      4.69  308.54  0.00432       12.5%     46.29
  WD13:  Seg 55   856-895      7.27  414.87  0.00016       25.0%     60.15
  WD14:  Seg 59   899-937      8.95  484.52  1.8e-05       30.0%     59.15
  WD15:  Seg 63   941-984      4.30  292.48  0.00710       25.0%     50.96
  WD16:  Seg 67   988-1029     6.27  373.63  0.00057       15.0%     58.74
  WD17:  Seg 71  1033-1084     4.37  295.25  0.00652       17.5%     46.62

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  277-326    -SS----I----PVPQNQAN---P-GM------VDY--QNPEHEQLIKRLRS-------------A-QSV-EE--VTYPAP----RQ-----QASWS
   WD 2  327-370    LED-LPRM----VALTLHQG---S-TV------TSM--D-----------FH-------------P-THHTLL--LVGSNN----GE-----VTLWE
   WD 3  392-430    -LA----F----QAAIVKDT---I-SV------SRV--T-----------WS-------------P-DGT-FV--GVAFTR----HL-----VHLYS
   WD 4  439-477    -------Q----QTEIDAHA---G-GV------NDL--A-----------FA-------------H-PNK-QLCVVTCGED----KL-----IKVWD
   WD 5  480-520    -GR----K----LFTFEGHE---A-PV------YSICPH-----------HK-------------E-SIQ-FI--FSTALD----GK-----IKAWL
   WD 6  524-566    -MG----S----RVDYDAPG---K-WC------TRM--L-----------YS-------------A-DGS-RL--FSCGTSKDGESY-----LVEWN
   WD 7  570-609    -GA----I----KRTYAGFR---KKST------GVV--Q-----------FD-------------T-TQN-HF--LAAGED----SQ-----IKFWD
   WD 8  610-653    MDNTNVLT----YTDAEGGL---P-SL------PCL--R-----------FN-------------K-EGN-LL--AVTTDN----GF-----KILAN
   WD 9  657-695    -MR----S----LKAIESTT---P-FE------ALR--S-----------PM-------------E-SAL-KV--SGTSAV----AS-----VSPVN
   WD10  699-742    -ER----S----SPVRPSII---N-GV------DGL--G-----------RN-------------V-DKP-RT--VEDAID----KANPWQLAEIVD
   WD11  743-786    PAN----CRLVTLPDNADST---H-KV------VRL--L-----------YT-------------N-SGV-GL--LALGSN----GI-----QKLWK
   WD12  820-852    SGV--------------NLE---E-AV------PCI--A-----------LS-------------K-NDS-YV--MSASGG-----K-----VSLFN
   WD13  856-895    -FK----V----MTTFMPPP---P-AS------TFL--A-----------FH-------------PQDNN-II--AIGMED----ST-----IHIYN
   WD14  899-937    -DE----V----KSKLKGHQ---K-RI------TGL--A-----------FS-------------S-SLN-IL--VSSGAD----SQ-----LCLWS
   WD15  941-984    -WE----K----RKSITIHL---P-AGKAPVGDTRV--Q-----------FH-------------S-DQI-RL--LV-VHE----TQ-----IAIYD
   WD16  988-1029   -MD----R----IRQWVPQDVLPA-PI------SYA--A-----------YS-------------C-NSQ-LV--YATFCD----GN-----VGVFD
   WD17 1033-1084   -LR----L----RCRIAPSV---Y-LP------SAV--L-----------NSSQAAYPLVVATHPI-EPN-QF--AIGLTD----GS-----VKVIE

   WD40 Template    TGE----C----LRTLSGHT---S-GV------TSV--S-----------FS-------------P-DGK-RL--VSGSED----GT-----IKVWD