WDRR: WD40 Repeat Recognition
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| JobID: DXGGO1659462351 Submitted: 2022-08-03 01:45:51 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79786872 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh08G013040 (Len=1645) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh08G013040, Len=1645): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEQSRFCFECLKGRIRVDFSDRLIVSYSISDTALPFTSTAVVQVSNGETSGSQFMIVYLPGHDYNCITNYVNEYLLDNF 80
WD40-rpts
Query 81 NSGNEDTKSQISEDQVETQGDSPHKGFLYSPQIGEKSLTDGSNYNHSSRLSCSRIISSLAPIARISISSLSTFDEIASNL 160
WD40-rpts
Query 161 LSGSLEDHILHSLCLLIEGRASGRDSINFLSLVGIPSFQETVFLNCLRHPNIVPVLSMLRTHGYTNAILPTTPYTLENIL 240
WD40-rpts
Query 241 HYSPDAIKSEWHIRFLLYQLLSALAFIHGLGIFHGNICPSSVMLNEMCWSWLQICDMPGLVCDLTRKEKKCSMATSGQVH 320
WD40-rpts
Query 321 CCAKDCSSKALYADLSVTSSIDWPSDFMRWWRGELSNFEYLLALNRLAGRRWDDHKFHTIMPWVIDFSTKPDESSDVGWR 400
WD40-rpts
Query 401 DLSKSKWRLAKGDEQLDFTYTTSEIPHHVSDECLSELAVCSYKARRLPLSILRMAVRSVYEPNEYPSNMQRLYQWTPDEC 480
WD40-rpts
Query 481 IPEFYCDSQIFYSMHDGMADLAVPPWAGSPEEFIKLHRVSLESDRVSEKLHEWIDVTFGYKMSGEAAIAAKNVMLPLSEP 560
WD40-rpts
Query 561 TLPRSMGRRQLFSRPHPKRKVPTKRSCQSPVMSVENQCHASEAEDKDIIMSEISYLEELEEASSFLEEARHLNAVYGYYA 640
WD40-rpts
Query 641 KKLEDMTSKEVLSAESFNKCLTNTSDIFVQHEFRTNITLSYLLEHVEVEGKDSIGYQDLLSWRERISQLQFSDGAANDIF 720
WD40-rpts
Query 721 SIGCILAELHLRRPLFHSTSLTMYLESGILPGFMQELPPDIKILVEACIQKDLTRRPSAKNILESPCFPATIKSCYLFLA 800
WD40-rpts
Query 801 PLQILAKDVTRLRYAANFAKQGALKAMGEFAAEMCAPYCLPLILAPQSDAEVEWAYVLLKEFLKCLMSKAVKTLVPGYSH 880
WD40-rpts
Query 881 LKVSLLQDSFVREIWNRLGKQVYMETIHPLVVSNLSVAPHKSSAAAASVLLIGSCEELGMPVTINQTILPLINCFGKGIC 960
WD40-rpts
Query 961 ADGIDALVRIGGLFGDIFVVKQMLPLLKNVVRCCIKFFSLSKPEPMQSWSSLALIDCFTTLDGIVAYLPGEVVLKELIEG 1040
WD40-rpts
Query 1041 QKCLHVMVLIQKNLDVSVLQVAASSLMTVCQLIGPDMIALHLIPQLREVFDELAFSQEAAYRSTSLGKSMKVSGPSSDGD 1120
WD40-rpts
Query 1121 VPNEGRMDLVLILYPTFASILGIEKLRQCCTTWLLLEQYLLRYHHWKWECTGESSRSSSDKLMSKKTEFSKGSTSEYSPA 1200
WD40-rpts (____________________________W
Query 1201 KLLLNGVGWSIPQSQRAQGAKNLMPLRRLHDVHQGSMQMHASICHSIQLEPWFWLPSIASSWDGPDFLGRAVGLKEELPW 1280
WD40-rpts D 1___________________________) (__________________WD 2_________________
Query 1281 KIKASVIYSVRAHHGAVRSLAICPDEFNVFTAGIGSGFKGMVQRWELSGVNCVSGYYGHEEVVNDICVLSPTGRIASCDG 1360
WD40-rpts ) (___________________WD 3__________________) (________________WD 4__________
Query 1361 TIHVWNSRSGKLISVFAESSVDSAHLASPLSSVLKTNADHANSISSNSLSNGILTSAFDGSLYTYMHHIEFAEKLVVGTG 1440
WD40-rpts _____) (_________________WD 5________________)(_________________WD 6__________
Query 1441 NGSLRFIDVSQGQKLHLWRGDGVESGFPSLVSTICSCGFDKMVADGASAMPSWIAAGLSSGYCRLFDARSGNVIATWRAH 1520
WD40-rpts _______) (______________________WD 7_____________________) (_________
Query 1521 DGYVTKLAAPEDHMLVSSSLDRTLRIWDLRRLSPSTPIILRGHNDGVSSFSMWGQDVISISRNKIGLSSLSKSADEDGQY 1600
WD40-rpts _______WD 8________________) (________________WD 9_______________)
Query 1601 RIIPQNLSSVDQGTRNLSVLSSISILRYSRLFVVGTEDGYMKICC 1645
WD40-rpts (_________________WD10________________)
 10 WD40-repeats found in QUERY=CmaCh08G013040 (Len=1645): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 23 1171-1231 3.26 249.28 0.02688 17.5% 26.98 WD 2: Seg 27 1241-1281 5.87 357.14 0.00096 15.0% 46.71 WD 3: Seg 31 1284-1326 6.95 401.76 0.00024 17.5% 52.10 WD 4: Seg 35 1330-1366 6.08 365.89 0.00073 30.0% 50.25 WD 5: Seg 39 1370-1408 6.68 390.43 0.00034 5.0% 41.41 WD 6: Seg 43 1409-1448 6.63 388.37 0.00036 20.0% 51.76 WD 7: Seg 48 1459-1507 5.90 358.35 0.00092 15.0% 34.50 WD 8: Seg 51 1511-1548 7.97 443.83 6.5e-05 35.0% 53.62 WD 9: Seg 55 1554-1590 5.94 360.05 0.00087 27.5% 44.55 WD10: Seg 59 1607-1645 6.83 396.65 0.00028 22.5% 43.23Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1171-1231 TGESSRSSSDKLMSKKTEFSKGSTSEYSPAKLLLNGVGWSIPQSQRA--QGA-K----NLMPLRRLHD WD 2 1241-1281 ASICHSI-----------------------QLEPWFWLPSIASSWDGPDFLGRA----VGLKEELPWK WD 3 1284-1326 -ASVIYS-----------------------VRAHHGAVRSLAICPDEFNVFT-AGIGSGFKGMVQRWE WD 4 1330-1366 -VNCVSG-----------------------YYGHEEVVNDICVLSPTGRIAS-C------DGTIHVWN WD 5 1370-1408 -GKLISV-----------------------FAESSVDSAHLASPLSSVLKTN-A----DHANSISSNS WD 6 1409-1448 LSNGILT-----------------------SAFDGSLYTYMHHIEFAEKLVV-G----TGNGSLRFID WD 7 1459-1507 RGDGVES--------------GFPSLVSTICSCGFDKMVADGASAMPSWIAA-G----LSSGYCRLFD WD 8 1511-1548 -GNVIAT-----------------------WRAHDGYVTKLA-APEDHMLVS-S----SLDRTLRIWD WD 9 1554-1590 -PSTPII-----------------------LRGHNDGVSS--FSMWGQDVIS-I----SRNKIGLSSL WD10 1607-1645 -LSSVDQ-----------------------GTRNLSVLSSISILRYSRLFVV-G----TEDGYMKICC WD40 Template TGECLRT-----------------------LSGHTSGVTSVSFSPDGKRLVS-G----SEDGTIKVWD |
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