Input parameters:

  Query = CmaCh09G007230 (Len=570)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh09G007230, Len=570):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGGVEDEEPASKRMKLASTEFRALSNGSSKDLMARPLPSEGDNGKVIGSRGVIKRDEFVRIIANALYSLGYKNSSARLEE 80  
WD40-rpts                                                                                      

Query       81 ESGIPLRSSSVNIFTQQILDGNWDESIKTLHKFGLSNENVVKSACFLILEQKYLELLEIDKVMEALKTLRTEIAPLSINI 160 
WD40-rpts                                                                              (_______

Query      161 VRIHELSSFVMSPSRSGLIGEENSRAKSRTKLLGELQKLLPPSIMIPENRLEDLVEQALLLQRDSCVYHNASDQDMSLYM 240 
WD40-rpts      __________________WD 1_________________________)                                

Query      241 DHDCGKNKIPSQTFQVLQAHSDEVWFLQFSHNGKFLASSSSDLSAIIWEVNSNGKCSLKHKLSGHQKPISLISWSPDDNQ 320 
WD40-rpts                (_________________WD 2________________)(____________________WD 3______

Query      321 LLTCGVEEVIRRWDVSTGKCLHVYEKAGFGMVSCGWFPDGKSILAGINDKSISMWDLDGKELDSWKGQRISKISDLEISD 400 
WD40-rpts      _____________)   (_________________WD 4________________)   (_________________WD 

Query      401 DGKNIISICRETAILLLDREIKIDRWIEEDQVITSFQLSKDNKFLLVNLLNQEIHLWSLVGEPNLVCKYTGHKRTRFVIR 480 
WD40-rpts      5________________)(_________________WD 6_________________)    (_________________

Query      481 SCFGGLEEAFIASGSEDSRVYIWHRGSGELIEALTGHSGSVNCVSWNPTNPHMLASASDDHTVRIWGVKGLNVKSKNAYS 560 
WD40-rpts      _WD 7__________________)   (_________________WD 8_________________)             

Query      561 NGIHYCNGGA 570 
WD40-rpts                

8 WD40-repeats found in QUERY=CmaCh09G007230 (Len=570):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   153-208      3.06  241.07  0.03455       15.0%     20.85
  WD 2:  Seg  5   251-289      8.96  484.67  1.8e-05       30.0%     55.47
  WD 3:  Seg  9   290-334      9.07  489.47  1.6e-05       30.0%     55.15
  WD 4:  Seg 13   338-376      9.82  520.35  6.0e-06       35.0%     56.86
  WD 5:  Seg 17   380-418      8.36  460.08  3.9e-05       22.5%     55.86
  WD 6:  Seg 21   419-458      8.46  464.33  3.4e-05       20.0%     53.99
  WD 7:  Seg 25   463-504      6.89  399.24  0.00026       22.5%     56.08
  WD 8:  Seg 29   508-547      9.01  487.04  1.7e-05       37.5%     55.54

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  153-208    -I-----APLSINIVRIHE---LSSFVMSP-SRSGLIGEENSRAKSRTKLLGELQKLLPPSIMIPE
   WD 2  251-289    -S-----QTFQVLQAHSDE---VWFLQFSH-NGKFLASSSSDLS-----------------AIIWE
   WD 3  290-334    VNSNGKCSLKHKLSGHQKP---ISLISWSP-DDNQLLTCGVEEV-----------------IRRWD
   WD 4  338-376    -G-----KCLHVYEKAGFG---MVSCGWFP-DGKSILAGINDKS-----------------ISMWD
   WD 5  380-418    -K-----ELDSWKGQRISK---ISDLEISD-DGKNIISICRETA-----------------ILLLD
   WD 6  419-458    RE-----IKIDRWIEEDQV---ITSFQLSK-DNKFLLVNLLNQE-----------------IHLWS
   WD 7  463-504    -P-----NLVCKYTGHKRTRFVIRSCFGGL-EEAFIASGSEDSR-----------------VYIWH
   WD 8  508-547    -G-----ELIEALTGHSGS---VNCVSWNPTNPHMLASASDDHT-----------------VRIWG

   WD40 Template    TG-----ECLRTLSGHTSG---VTSVSFSP-DGKRLVSGSEDGT-----------------IKVWD