Input parameters:

  Query = sp_Q6CS21_ATG18_KLULA (Len=500)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (sp_Q6CS21_ATG18_KLULA, Len=500):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNLPIINFINFNQNGSCISMGTSQGFKIFNCEPFGRFYQDEEGGCGIVEMLFSTSLLAVVGMGDNPAMSPRRLRMLNTK 80  
WD40-rpts      (_____________WD 1____________)   (___________________WD 2___________________)  

Query       81 RHSVICEVTFPTTILSVKMNKSRLAVLLQEQIYIYDISNMRLLHTIETSMNAQGIMSMSPNSENNYLVYPSPPKVINSEI 160 
WD40-rpts       (_______________WD 3______________)                                            

Query      161 KDHATTNNINIKKTDAVDDTIKKDYSLQVPSDITGQQQQQQPGVDPATSNNTANKIIKNGDVIVFNLQTLQPTMVIEAHK 240 
WD40-rpts                                (_________________WD 4_________________)   (__________

Query      241 GEIAALKLSADGTLLATASEKGTIIRVFNVENGSKVYQFRRGTYPTKISSLSFSKDNQFLAVCSSSKTVHIFKLGKNTVD 320 
WD40-rpts      _______WD 5_________________)   (__________________WD 6_________________)_______

Query      321 NKSNELNSDDEIEDDLVPRYGDEDEEDEEIDEEATSINSNHSSKEPVVDAKRSTVGRMIRKSSQRLSRKAARTLGAYFPI 400 
WD40-rpts      __________WD 7________________)                                                 

Query      401 KVSSILEPSRHFASLKITTSSNQPIKAIAAIDDPIELSIKEYPDLFEKNASNNGDYQNSDTLTMVPIRVVSSEGFMYKYI 480 
WD40-rpts                                               (_________________WD 8________________)

Query      481 SDPERGGDCILLEQYSLLSD 500 
WD40-rpts                          

8 WD40-repeats found in QUERY=sp_Q6CS21_ATG18_KLULA (Len=500):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-31       3.79  271.36  0.01364       10.0%     45.54
  WD 2:  Seg  4    35-78       5.22  330.33  0.00220       10.0%     41.12
  WD 3:  Seg  8    82-116      3.37  253.86  0.02336       12.5%     42.37
  WD 4:  Seg 18   187-226      5.47  340.68  0.00159        7.5%     10.11
  WD 5:  Seg 19   230-269      7.93  442.12  6.8e-05       27.5%     57.27
  WD 6:  Seg 23   273-313      7.06  406.38  0.00021       22.5%     57.81
  WD 7:  Seg 26   313-351      6.44  380.80  0.00046       17.5%      0.08
  WD 8:  Seg 33   442-480      6.17  369.33  0.00066       12.5%     36.80

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-31     ----------MSNLPIINFINFNQNGSCISMG-----T-SQG-FKIFN
   WD 2   35-78     -FGRFYQD--EEGGCGIVEMLFSTSLLAVVGMGDNPAMSPRR-LRMLN
   WD 3   82-116    -HSVICEV--TFPTT-ILSVKMNKSRLAVLL--------QEQ-IYIYD
   WD 4  187-226    LQVPSDIT--GQQQQQQPGVDPATSNNTANKI-----IKNGD-VIVFN
   WD 5  230-269    -LQPTMVI--EAHKGEIAALKLSADGTLLATA-----SEKGTIIRVFN
   WD 6  273-313    -GSKVYQFRRGTYPTKISSLSFSKDNQFLAVC-----SSSKT-VHIFK
   WD 7  313-351    -KLGKNTV--DNKSNELNSDDEIEDDLVPRYG-----DEDEE-DEEID
   WD 8  442-480    -YPDLFEK--NASNNGDYQNSDTLTMVPIRVV-----SSEGF-MYKYI

   WD40 Template    TGECLRTL--SGHTSGVTSVSFSPDGKRLVSG-----SEDGT-IKVWD