Input parameters:

  Query = CmaCh04G006990 (Len=360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh04G006990, Len=360):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVVFDSLDPSSSSTSLTRTSNFKAHEAAIFKIVWVPPEYGDSIACICS 80  
WD40-rpts      (________________WD 1_______________)          (__________________WD 2__________

Query       81 DGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQILDIQFGNSSSGLKMIAAFSDGNVKVYELMDPLDLKSWQLQAEFQNVID 160 
WD40-rpts      _______)          (__________________WD 3_________________)   (_______________WD

Query      161 SISTVRKAACLSASISWNPNRGERQQSSFVLAFRSDTPQLDSAKVWEFDRAHQRWLPVAELALEADKGDGVYAVAWAQNI 240 
WD40-rpts       4_______________)                               (______________________WD 5____

Query      241 GRPYEVIAVATQKGIAIWRLGLNPDSDGRLSTERVALLSGHNSEVWDMEWDMGGMTLASTGKDGMVRLWQSNLNGLSRSR 320 
WD40-rpts      __________________)(_______________________WD 6______________________)      (___

Query      321 SFLSKEKKQKVEEMEDPNVKETETTNMEVASLKFGHSPSA 360 
WD40-rpts      ______________WD 7_________________)    

7 WD40-repeats found in QUERY=CmaCh04G006990 (Len=360):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       8.76  476.39  2.4e-05       27.5%     47.06
  WD 2:  Seg  4    48-88       6.89  399.09  0.00026       15.0%     52.52
  WD 3:  Seg  8    99-139      7.27  414.85  0.00016       17.5%     57.86
  WD 4:  Seg 12   143-178      3.68  266.64  0.01577        5.0%     25.51
  WD 5:  Seg 16   210-259      6.08  365.78  0.00073       15.0%     54.76
  WD 6:  Seg 20   260-310      8.75  476.12  2.4e-05       35.0%     57.80
  WD 7:  Seg 23   317-356      3.02  239.25  0.03653       15.0%     25.67

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     --------------MEKAMATFDKGTVCSAWNY--S---ASRL-VTGSADGTVVVFD
   WD 2   48-88     -L-----------TRTSNFKAHEAAIFKIVWVP--P-EYGDSI-ACICSDGSSSLWE
   WD 3   99-139    -W-----------KLSKHFKSNSSQILDIQFGNSSS---GLKM-IAAFSDGNVKVYE
   WD 4  143-178    -P-----------LDLKSWQLQAEFQNVIDSIS--T------V-RKAACLSASISWN
   WD 5  210-259    RA----HQRWLPVAELALEADKGDGVYAVAWAQ--NIGRPYEV-IAVATQKGIAIWR
   WD 6  260-310    LGLNPDSDGRLSTERVALLSGHNSEVWDMEWDM--G---GMTL-ASTGKDGMVRLWQ
   WD 7  317-356    -S-----------RSRSFLSKEKKQKVEEMEDP--N---VKETETTNMEVASLKFGH

   WD40 Template    TG-----------ECLRTLSGHTSGVTSVSFSP--D---GKRL-VSGSEDGTIKVWD