Input parameters:

  Query = CsaV3_5G039580 (Len=723)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G039580, Len=723):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKLDNKSSRKACKLQTKHGKKKSHVNESKSQPEKQNDVELDLEQEAPTLDEATVQQHLDSSPPFDCSEDNVNAGDDHH 80  
WD40-rpts                                                                                      

Query       81 NLENDKDQENCDDNPLPDQGEEESDSSEDEVAPRNTVGDVPLEWYRDEKHIGYDISGKKILKKEREDRLQSFLASADDSK 160 
WD40-rpts                                                                                      

Query      161 SWRKVYDEYNDEIIELSKEEVRQLRRLLKGKAPHADFDPHAPYVDWFKWDDAKHPLSNAPEPKRRFIRSKWEAKKVVRLV 240 
WD40-rpts                                                                                      

Query      241 RAIRNGHIKFDKPKEEQQFHDLWGDDSSTTEKTSHLSYIPAPKPKLPGHDESYNPSLEYIPTQEEINSYQLMYEEDRPKF 320 
WD40-rpts                                                                                      

Query      321 IPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPNRKDLRPYPTTCYLEYRGHKDAVMSISTE 400 
WD40-rpts                                                                  (_________________WD

Query      401 ANGQWIASGSLDGTVRIWEVETGRCLKVLELGEPVKYVAWNPRPDLPILAAAAGADVLLLNTGLGDGEVQAKIKEVLHVD 480 
WD40-rpts       1________________)   (_________________WD 2________________)(_______________WD 

Query      481 KLPVTENSDKTPAATWLQDDKTGGIRLRHFKSVSAVEWHRKGDYLSTVLPAGESKAVLIHQLSKKLTQKIPFKLHGLPVS 560 
WD40-rpts      3______________)   (__________________WD 4__________________)                   

Query      561 SVFHPTQSILFVSTKKEVRVYNLLKQKLLKKLKTGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSEPYKILRCHPK 640 
WD40-rpts                               (_________________WD 5________________)    (___________

Query      641 DITNVAFHRSRPLFASCSDDGTAYVFHGMVYSDLTQNPLITPLEILRGHKTVNGRGVMDCKFHPMQPWLFTAGADSVIKL 720 
WD40-rpts      ______WD 6________________)            (___________________WD 7_________________

Query      721 YCH 723 
WD40-rpts      _) 

7 WD40-repeats found in QUERY=CsaV3_5G039580 (Len=723):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   381-419      8.09  449.04  5.5e-05       35.0%     55.89
  WD 2:  Seg  8   423-461      3.24  248.50  0.02753       17.5%     53.30
  WD 3:  Seg 12   462-496      2.88  233.54  0.04346       20.0%     20.25
  WD 4:  Seg 15   500-541      4.53  301.58  0.00536       15.0%     48.13
  WD 5:  Seg 23   586-624      7.16  410.38  0.00018       25.0%     55.08
  WD 6:  Seg 27   629-667      7.56  426.90  0.00011       30.0%     55.61
  WD 7:  Seg 31   680-722      5.34  335.11  0.00190       30.0%     49.14

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  381-419    -TTCYLEYRGHKD----AVMSISTEANGQW-IAS---GSLDGTVRIWE
   WD 2  423-461    -GRCLKVLELG-E----PVKYVAWNPRPDLPILA---AAAGADVLLLN
   WD 3  462-496    TGLGDGEVQAKIK----EVLHVDKLP------VT---ENSDKTPAATW
   WD 4  500-541    -DKTGGIRLRHFK----SVSAVEWHRKGDY-LSTVLPAGESKAVLIHQ
   WD 5  586-624    -QKLLKKLKTGLR----EVSSIAVHPAGDN-VIV---GSREGKLCWFD
   WD 6  629-667    -SEPYKILRCHPK----DITNVAFHRSRPL-FAS---CSDDGTAYVFH
   WD 7  680-722    -ITPLEILRGHKTVNGRGVMDCKFHPMQPW-LFT---AGADSVIKLYC

   WD40 Template    TGECLRTLSGHTS----GVTSVSFSPDGKR-LVS---GSEDGTIKVWD