WDRR: WD40 Repeat Recognition
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| JobID: D9AYZ1330328904 Submitted: 2012-02-27 15:48:24 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 408923494 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = sp_P90794_DCA11_CAEEL (Len=571) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (sp_P90794_DCA11_CAEEL, Len=571): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGNWITSTFLRFDLFQRHQPNRFLEYTRVQHSNQSPAYSVRTAAEIVAHQRMKPNHSNDSDTDFSSDDEGCPKMTPHEEQ 80
WD40-rpts
Query 81 QMFEREQHIAFSGRCHIGDPESCTQLRNEINSRCGPRPSTSNNMEFILNRDLQKRGTSISNPRTVARVLNSHLPNQKRRV 160
WD40-rpts (________________WD 1_______________) (______
Query 161 DRVATKSFCTQYIQNGTKIVVASQDEKIRFYQRNPDKSKYRSKYMKSDELRVDQCGWSILDTAISLNGDLIAYGTWKDAV 240
WD40-rpts ___________WD 2________________) (_________________WD 3_____________
Query 241 FVGKLDFTERQNITWFPIDLNGEPGRDHCAVFCVKFSDSSEQIVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVNSVCFA 320
WD40-rpts ___) (__________________WD 4__________________)(___________________WD 5
Query 321 DLGSNLIYSAGDDGLVKVWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVEAT 400
WD40-rpts ___________________) (_________________WD 6________________) (_________
Query 401 RACVQSQHWDYRWQPAPPGLCQPVAGDTSVMTLRGHSVLHTLVRANFSPESTGRRYIYTGCARGEVVVYDIMSGTVSRRL 480
WD40-rpts ________WD 7________________)_________________WD 8___________________) (______
Query 481 KGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHPNISQFGDEDSCDELFQPVKKQCRRQRKTMSSRG 560
WD40-rpts ___________WD 9________________)(_____________WD10____________)
Query 561 HPCSSSSISQN 571
WD40-rpts
 10 WD40-repeats found in QUERY=sp_P90794_DCA11_CAEEL (Len=571): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 114-150 4.60 304.77 0.00485 7.5% 18.28 WD 2: Seg 7 154-192 8.50 465.60 3.3e-05 15.0% 49.25 WD 3: Seg 12 206-244 7.44 422.06 0.00013 10.0% 53.15 WD 4: Seg 17 255-296 7.19 411.58 0.00018 22.5% 42.31 WD 5: Seg 20 297-340 7.75 434.92 8.6e-05 35.0% 50.63 WD 6: Seg 24 349-387 9.63 512.53 7.7e-06 45.0% 55.92 WD 7: Seg 28 391-429 5.86 356.87 0.00096 7.5% 17.21 WD 8: Seg 30 427-470 5.49 341.60 0.00155 27.5% 56.53 WD 9: Seg 34 474-512 9.73 516.39 6.8e-06 35.0% 56.24 WD10: Seg 38 513-543 3.88 274.82 0.01226 15.0% 36.31Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 114-150 -C--G---PRPSTSNNM--EFILNRDLQKRG---TSI-SNPR--TVARVLN WD 2 154-192 -P--N---QKRRVDRVA--TKSFCTQYIQNG---TKI-VVASQDEKIRFYQ WD 3 206-244 -K--S---DELRVDQCG--WSILDTAISLNG---DLI-AYGTWKDAVFVGK WD 4 255-296 WFPID---LNGEPGRDH--CAVFCVKFSDSS---EQI-VCGTSQYSIHVFD WD 5 297-340 VE--QRRRIRTIVNAHE--DDVNSVCFADLG---SNLIYSAGDDGLVKVWD WD 6 349-387 -V--E---PVGVFAGHR--DGVTHVDSRQDE---RYL-LSNSKDQTIKVWD WD 7 391-429 -F--S---NMSGVEATR--ACVQSQHWDYRW---QPA-PPGLCQPVAGDTS WD 8 427-470 -D--T---SVMTLRGHSVLHTLVRANFSPESTGRRYI-YTGCARGEVVVYD WD 9 474-512 -G--T---VSRRLKGHT--AVVRECDWHPTE---NEI-VSSAWDGVTTVWT WD10 513-543 ------------WDERQ--EGVIAPYDHPNI-----S-QFGDEDSCDELFQ WD40 Template TG--E---CLRTLSGHT--SGVTSVSFSPDG---KRL-VSGSEDGTIKVWD |
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