Input parameters:

  Query = CsaV3_5G030120 (Len=344)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_5G030120, Len=344):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTLKFNPDGNVVASGSHDKEIFL 80  
WD40-rpts            (______________WD 1______________)   (_________________WD 2_______________

Query       81 WNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSD 160 
WD40-rpts      _)    (_________________WD 3________________)   (_________________WD 4__________

Query      161 DGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240 
WD40-rpts      _______)   (________________WD 5________________)   (_________________WD 6______

Query      241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNE 320 
WD40-rpts      __________)       (___________________WD 7__________________)   (_______________

Query      321 CVFHPSEPIVASCGSDKQIYLGEI 344 
WD40-rpts      __WD 8________________) 

8 WD40-repeats found in QUERY=CsaV3_5G030120 (Len=344):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-40       3.98  278.98  0.01078       12.5%     28.64
  WD 2:  Seg  4    44-82       9.92  524.36  5.3e-06       37.5%     54.34
  WD 3:  Seg  8    87-125      9.64  512.96  7.6e-06       32.5%     55.90
  WD 4:  Seg 12   129-168      9.03  487.80  1.7e-05       40.0%     56.97
  WD 5:  Seg 16   172-209      8.28  456.81  4.3e-05       30.0%     57.73
  WD 6:  Seg 20   213-251     10.30  540.18  3.3e-06       37.5%     56.35
  WD 7:  Seg 24   259-301      8.42  462.28  3.7e-05       30.0%     57.50
  WD 8:  Seg 28   305-343      9.14  492.27  1.4e-05       27.5%     58.62

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-40     GENALATVGPRP----MEWSTVPYNP-------PQGPGPNVKQRT
   WD 2   44-82     -ESPIMLLSGHQ----SAIYTLKFNPDGN-VVASGSHDKEIFLWN
   WD 3   87-125    -CKNFMVLRGHK----NAVLDLHWTVDGS-QIVSASPDKTLRAWD
   WD 4  129-168    -GKQIKKMAEHS----SFVNSCCPTRRGPPLIVSGSDDGTAKLWD
   WD 5  172-209    -RGAIQTFPDKY----Q-ITAVSFSDASD-KIFTGGIDNDVKVWD
   WD 6  213-251    -GEVMMTLQGHQ----DMITGMQLSPDGS-YLLTNGMDCKLCIWD
   WD 7  259-301    -NRCVKIFEGHQHNFEKNLLKCSWSADGS-KVTAGSSDRMVYIWD
   WD 8  305-343    -RRILYKLPGHT----GSVNECVFHPSEP-IVASCGSDKQIYLGE

   WD40 Template    TGECLRTLSGHT----SGVTSVSFSPDGK-RLVSGSEDGTIKVWD