JobID: D7BAL1659504482 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = CmaCh17G008170 (Len=911)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh17G008170, Len=911):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQSQIMVKSFDVTELPVRSAKFIVQKQWVVAGADDMF 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKGSRRVVIGYDEGTIMVKLGREVPVASMDNTGKIIWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)(__________________WD

Query      321 EIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSSD 400 
WD40-rpts       8_________________)  (________________WD 9________________)                    

Query      401 GEYAARESTSKIKIFTKNFQEKKSIRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVAI 480 
WD40-rpts                                                          (_________________WD10______

Query      481 SSDSAFYILKYNRDVVSSYLDSGRSVDEQGAEDAFELLHETSERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDR 560 
WD40-rpts      __________)(_________________WD11_________________)                             

Query      561 PMYLLGYLASHSRVYLVDKEFNVLGYTLLLSLIEYKTLVMRGDLERASEILPSIPKEHHNSVARFLESRGMVEEALEVAT 640 
WD40-rpts                                                                                      

Query      641 DPDYRFELAIQLGKLDVAKEIAMVVHSESKWKQLGELAMSTGKLEMAEECLNFAMDLSGMLLLYSSLGDVEGISKLASLA 720 
WD40-rpts                                                                                      

Query      721 KEQGKNNVAFLCLFTLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAADSLADPEEYPNLFD 800 
WD40-rpts                                                                                      

Query      801 DWQLAISVESKFSETRGVYPPAVEYANQAERSHTTLVEAFRNMPMDEEELLENGNSNLENGDEETAEHQNGQNSQEDPVV 880 
WD40-rpts                                                                                      

Query      881 VDADSTDGAVLVNGNEDDEEWGTNNEGTQSA 911 
WD40-rpts

11 WD40-repeats found in QUERY=CmaCh17G008170 (Len=911):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.33  375.99  0.00053       25.0%     55.66
  WD 2:  Seg  5    47-85       6.72  392.17  0.00032       20.0%     56.71
  WD 3:  Seg  9    89-127      8.11  449.70  5.4e-05       27.5%     56.77
  WD 4:  Seg 13   128-171      7.74  434.54  8.7e-05       37.5%     57.12
  WD 5:  Seg 17   172-215      7.88  440.29  7.2e-05       42.5%     50.45
  WD 6:  Seg 21   219-257      9.95  525.77  5.1e-06       42.5%     55.48
  WD 7:  Seg 25   261-299      5.58  345.02  0.00139       25.0%     54.33
  WD 8:  Seg 29   300-340      3.63  264.74  0.01672        7.5%     27.06
  WD 9:  Seg 33   343-380      3.73  268.82  0.01475       17.5%     48.35
  WD10:  Seg 44   453-491      3.10  242.74  0.03284       15.0%     41.45
  WD11:  Seg 47   492-531      5.16  327.67  0.00239       12.5%     28.63

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--E---I-KRKLAQRSERVKSVDLHP-TEPW--ILASLYSGTLCIWN
   WD 2   47-85     -Q--I---M-VKSFDVTELPVRSAKFIV-QKQW--VVAGADDMFIRVYN
   WD 3   89-127    -M--D---K-VKVFEAHTDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 4  128-171    WE--KGWVC-TQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN
   WD 5  172-215    LGSPD---P-NFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--S---C-VQTLEGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--R---L-ENTLNYGLERVWAIGYIK-GSRR--VVIGYDEGTIMVKL
   WD 8  300-340    GR--E---VPVASMDNTGKIIWAKHNEI-QTVN--IKSVGADYEVTDGE
   WD 9  343-380    -P--L---A-VKELGTCDLYPQSLKHNP-NGRF--VVVCG-DGEYIIYT
   WD10  453-491    WA--E---C--RLIRRIDVNVKNLYWAD-SGDL--VAISSDSAFYILKY
   WD11  492-531    NR--D---V-VSSYLDSGRSVDEQGAED-AFEL--LHETSERVRTGLWV

   WD40 Template    TG--E---C-LRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD