WDRR: WD40 Repeat Recognition
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| JobID: D3LU51659461319 Submitted: 2022-08-03 01:28:39 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79754176 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh04G017900 (Len=434) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh04G017900, Len=434): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRLRSWLLPCSTAAKPSCNKPPEPSSSSFYLSSDGSSLSEMSANCSSSLTSTPSSDTSYSSLQTNLSLQSLPSIPSLQKL 80
WD40-rpts (__________________WD 1__________________) (_________________WD 2___________
Query 81 PTITDALPVSVSQHHLASFKLPISHLAVHGAYLYVATAHEINVYDRITFSHLTAFNDRDSSSGSVKGISFLRREILTSHQ 160
WD40-rpts _____) (________________WD 3________
Query 161 DGKIRVWNLSENNKQFKLVNTLPTVNDRLRRFILPSNYVNVRRHKKVLWIQHADAVTGLAVNGDSVYSVSWDRSLKVWQG 240
WD40-rpts _______) (________________WD 4_______________)
Query 241 SNHRCVESVKAAHEDAINAVAVSAGGTVYTGSADRKIRVWAKPETEKRHVLVATLEKHKSAVNALALNEEGSLLFSGACD 320
WD40-rpts (_________________WD 5________________)(____________________WD 6______________
Query 321 RSVLVWEREDSANHMAVIGALRGHRNAILCLIYVSDLLLSGSADRTVRVWQRGADGSFNCLSVLEGHKKAVKSLVVVSEG 400
WD40-rpts ______) (________________WD 7_______________)(______________________WD 8__
Query 401 ESDGVVSVCSGSLDGELKSWKLSFSPNSNIMNCR 434
WD40-rpts ____________________)
 8 WD40-repeats found in QUERY=CmaCh04G017900 (Len=434): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 3-44 3.76 269.96 0.01424 12.5% -9.66 WD 2: Seg 2 48-86 4.31 292.72 0.00705 5.0% -6.02 WD 3: Seg 6 132-168 6.38 378.08 0.00050 20.0% 46.29 WD 4: Seg 12 203-239 7.07 406.67 0.00021 25.0% 48.64 WD 5: Seg 16 243-281 7.16 410.25 0.00018 27.5% 49.05 WD 6: Seg 20 282-327 9.32 499.81 1.1e-05 32.5% 53.35 WD 7: Seg 24 335-371 7.46 422.72 0.00012 30.0% 50.97 WD 8: Seg 28 372-421 8.30 457.63 4.2e-05 40.0% 54.80Multiple sequence alignment of 8 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3-44 LR-----S------WLLPC-STAAKPSCNKPPEPSSSSF-----YLSSDGSSLSEMSAN WD 2 48-86 -S-----L------TSTPS-SDTSYSSLQTNLSL--QSL-----PSIPSLQKLPTITDA WD 3 132-168 -L-----T------AFNDR-DSSSGSVKGISFLR--R-------EILTSHQDGKIRVWN WD 4 203-239 -R-----H------KKVLW-IQHADAVTGLAVNG--DS-------VYSVSWDRSLKVWQ WD 5 243-281 -H-----R------CVESVKAAHEDAINAVAVSA--GG------TVYTGSADRKIRVWA WD 6 282-327 KP-----ETEKRHVLVATL-EKHKSAVNALALNE--EGS-----LLFSGACDRSVLVWE WD 7 335-371 -M-----A------VIGAL-RGHRNAILCLIYVS--D-------LLLSGSADRTVRVWQ WD 8 372-421 RGADGSFN------CLSVL-EGHKKAVKSLVVVS--EGESDGVVSVCSGSLDGELKSWK WD40 Template TG-----E------CLRTL-SGHTSGVTSVSFSP--DGK-----RLVSGSEDGTIKVWD |
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