Input parameters:

  Query = HsPEX7 (Len=323)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (HsPEX7, Len=323):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTLLILDPDEAGLRLFRSFDWNDGLFDVTWSENNE 80  
WD40-rpts          (_____________________WD 1_____________________)    (_________________WD 2__

Query       81 HVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQEVYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYS 160 
WD40-rpts      _______________)    (__________________WD 3_________________)   (_______________

Query      161 TIWSPHIPGCFASASGDQTLRIWDVKAAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLG 240 
WD40-rpts      __WD 4_________________)   (_________________WD 5_________________)    (________

Query      241 HTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVADCSWDETIKIYDPACLT 320 
WD40-rpts      _________WD 6_________________)    (_________________WD 7_________________)     

Query      321 IPA 323 
WD40-rpts         

7 WD40-repeats found in QUERY=HsPEX7 (Len=323):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-52       5.99  361.98  0.00082       27.5%     50.30
  WD 2:  Seg  5    57-96       7.83  438.11  7.7e-05       27.5%     56.89
  WD 3:  Seg  9   101-141      8.47  464.67  3.4e-05       37.5%     50.93
  WD 4:  Seg 13   145-184      8.73  475.29  2.4e-05       37.5%     58.03
  WD 5:  Seg 17   188-227      7.97  444.05  6.4e-05       20.0%     56.47
  WD 6:  Seg 21   232-271      8.39  461.08  3.8e-05       35.0%     53.35
  WD 7:  Seg 25   276-315      7.95  442.90  6.7e-05       30.0%     53.02

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-52     CGGAARMLRTPGRHGYAAEFSPYL--P-GR-LACATAQHYGIAGCGTLLILD
   WD 2   57-96     -GLRLFRSFDWNDGLFDVTWSE-N--N-EHVLITCSGD-------GSLQLWD
   WD 3  101-141    -AGPLQVYKEHAQEVYSVDWSQ-TRGE-QL-VVSGSWD-------QTVKLWD
   WD 4  145-184    -GKSLCTFRGHESIIYSTIWSP-H-IP-GC-FASASGD-------QTLRIWD
   WD 5  188-227    -AGVRIVIPAHQAEILSCDWCKYN--E-NL-LVTGAVD-------CSLRGWD
   WD 6  232-271    -RQPVFELLGHTYAIRRVKFSPFH--A-SV-LASCSYD-------FTVRFWN
   WD 7  276-315    -DSLLETVEHHTEFTCGLDFSL-Q--SPTQ-VADCSWD-------ETIKIYD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-D--G-KR-LVSGSED-------GTIKVWD