Input parameters:

  Query = CmaCh14G006660 (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh14G006660, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALTELDDGTVRSMAIGAVFSDFVGKINSLDFHRKDDLLVTASEDDSVRLYDIANARLLKTTFHKKHGADRICFTHHPSS 80  
WD40-rpts            (____________________WD 1____________________)   (____________________WD 2

Query       81 VICSSRYNLDTSGESLRYLSMYDNRCLRYFKGHKERVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTV 160 
WD40-rpts      ___________________)   (_________________WD 3________________)(_________________

Query      161 AYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDMAEVFDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKQCGFSL 240 
WD40-rpts      WD 4_________________)       (_________________WD 5________________)     (______

Query      241 EPSPNTTIEATFTPDGQYVISGSGDGTLHAWNINKRTEVASWNSHIGVASCLKWAPRRVMFVAASTVLTFWIPNTSKSTG 320 
WD40-rpts      ___________WD 6________________)   (_________________WD 7________________)      

Query      321 ESGMEFEARSQGEHLSQ 337 
WD40-rpts                       

7 WD40-repeats found in QUERY=CmaCh14G006660 (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-52       8.70  473.95  2.5e-05       25.0%     52.50
  WD 2:  Seg  6    56-100      7.08  407.17  0.00020       12.5%     55.08
  WD 3:  Seg 10   104-142     10.38  543.28  3.0e-06       37.5%     58.38
  WD 4:  Seg 14   143-182      7.47  423.29  0.00012       20.0%     48.36
  WD 5:  Seg 18   190-228      8.45  463.54  3.5e-05       25.0%     55.31
  WD 6:  Seg 22   234-272      9.52  507.82  8.9e-06       32.5%     57.23
  WD 7:  Seg 26   276-314      8.27  456.11  4.4e-05       12.5%     47.58

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-52     DDGTVRSMAIGAVFSDFVGKINSLDFHRKDDLLVTAS------EDDSVRLYD
   WD 2   56-100    -ARLLK------TTFHKKHGADRICFTHHPSSVICSSRYNLDTSGESLRYLS
   WD 3  104-142    -NRCLR------YFKGHKERVVSLCMSPINDSFMSGS------LDHSVRIWD
   WD 4  143-182    LRVNAC------QGILRLRGRPTVAYDQQGLVFAVAM------EGGAIKLFD
   WD 5  190-228    -PFDTF------LVGGDMAEVFDIKFSNDGKSMLLTT------TNNNIYVLD
   WD 6  234-272    -KQCGF------SLEPSPNTTIEATFTPDGQYVISGS------GDGTLHAWN
   WD 7  276-314    -RTEVA------SWNSHIGVASCLKWAPRRVMFVAAS------TVLTFWIPN

   WD40 Template    TGECLR------TLSGHTSGVTSVSFSPDGKRLVSGS------EDGTIKVWD