Input parameters:

  Query = PpTPL1 (Len=1158)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (PpTPL1, Len=1158):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQSGEWEEVERYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLTLENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LAFPSLKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCGPPNGARAPPPTNNPLVGGLPKQGAFPPLTTHSPFQ 240 
WD40-rpts                                                                                      

Query      241 PAPPSASALAGWMANPNPPAPHAPVANGPAALTAPPNSATLLKRPRTPPSTTPTVDYQSADSEHLMKRARPGIQSVDEAK 320 
WD40-rpts                                                                 (_________________WD 

Query      321 TVNCVGPSHPQNNVSPDDLPKNVARSLNQGSCVMSMDFHPIQLSILLVGTNVGDIGIWEVGSRDRLAQRTFKVWDITAAS 400 
WD40-rpts      1________________)(__________________WD 2_________________)                     

Query      401 MPMQAALVKDPAVSVNRTVWNPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDD 480 
WD40-rpts          (_______________WD 3_______________)(_____________________WD 4______________

Query      481 KTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRVDYDAPGHWCTTMAYSADGTRL 560 
WD40-rpts      ______)   (__________________WD 5_________________)   (___________________WD 6__

Query      561 FSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSSGVVQFDTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASP 640 
WD40-rpts      ________________)   (_________________WD 7_________________)   (________________

Query      641 RLRFNKEGSLLAVTSSDNGIKILANRDGMQMLRALEARAYDTNRAPPEPAVSKPPVGNTLGVVSTPGGGGGDRPNSSSMA 720 
WD40-rpts      __WD 8_________________)(_________________WD 9_________________)                

Query      721 GSVMDGPTLNMGGSRVRPRDRVGNDHSGMEGGRTPETKPRIPDDIPDRSKSWKLTEITEQNQCRTIRLPDSLPPNKVARL 800 
WD40-rpts                (___________________WD10__________________)     (___________________WD

Query      801 IYTNAGVALLALASNAVHKLWKWQRNERNVSGKATASVTPQLWQPASGILMTNDISETNPEDAVPCIALSKNDSYVMSAS 880 
WD40-rpts      11___________________)                      (___________________WD12____________

Query      881 GGKVSLFNMMTFKVMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFSNTLNVL 960 
WD40-rpts      _______)   (_________________WD13_________________)   (_________________WD14____

Query      961 VSSGADAQLCMWGTDGWEKKKSKFVQVQPGGRSPSIGDTRVQFHNDQVRLLVVHESQLAVYDASKLDRLRQWVPQNPFPA 1040
WD40-rpts      ____________)              (_______________WD15______________) (________________

Query     1041 AISNATYSCDSQLIYAGFVDGSVGVFDAESLRPRCRLAPTVHVPSGVSGSTVYPLVIAAHPAEPNQFALGLSDGGVQVIE 1120
WD40-rpts      ___WD16___________________)          (___________________WD17__________________)

Query     1121 PLESEGKWGTGPPADNGTASGVPSGPASGNQGSDQTPR 1158
WD40-rpts                                            

17 WD40-repeats found in QUERY=PpTPL1 (Len=1158):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   300-338      6.60  387.11  0.00038       10.0%     33.83
  WD 2:  Seg  8   339-379      8.08  448.37  5.6e-05       25.0%     55.09
  WD 3:  Seg 13   405-440      6.88  398.97  0.00026       12.5%     50.71
  WD 4:  Seg 16   441-487      7.46  422.67  0.00013       35.0%     55.01
  WD 5:  Seg 20   491-531      7.39  419.89  0.00014       32.5%     56.54
  WD 6:  Seg 24   535-577      6.07  365.40  0.00074       20.0%     54.86
  WD 7:  Seg 28   581-620      7.43  421.73  0.00013       30.0%     54.99
  WD 8:  Seg 32   624-664      6.67  390.14  0.00034       25.0%     57.65
  WD 9:  Seg 36   665-704      8.24  455.05  4.6e-05       10.0%     46.49
  WD10:  Seg 41   731-773      6.35  377.06  0.00052       17.5%     34.15
  WD11:  Seg 46   779-822      6.75  393.38  0.00031       20.0%     54.63
  WD12:  Seg 52   845-888      4.93  318.19  0.00320       10.0%     42.88
  WD13:  Seg 56   892-931      7.03  405.01  0.00022       25.0%     57.93
  WD14:  Seg 60   935-973      8.71  474.57  2.5e-05       30.0%     57.96
  WD15:  Seg 65   988-1022     2.93  235.60  0.04082       22.5%     32.48
  WD16:  Seg 68  1024-1067     6.98  403.12  0.00023       17.5%     51.26
  WD17:  Seg 73  1078-1120     3.96  278.25  0.01103       15.0%     30.44

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  300-338    -A-----D---SE-----HLM----K--RARPGIQS-V---DEAK-TV-NCV--GPSH----PQNNVSPDD
   WD 2  339-379    LP-----K---NV-----ARS----L--NQGSCVMS-M---DFHP-IQLSIL--LVGT----NVGDIGIWE
   WD 3  405-440    ------------A-----ALV----K--DPAVSVNR-T---VWNP-DG-TLL--GVAF----SKHIVHIYA
   WD 4  441-487    YNGGSDLR---QH-----LEI----D--AHVGGVND-L---AFSH-PN-KQLCVITCG----DDKTIKVWD
   WD 5  491-531    -G-----R---KQ-----YTF----E--GHEAPVYS-V-CPHHKE-SI-QFI--FSTA----IDGKIKAWL
   WD 6  535-577    -L-----G---SR-----VDY----D--APGHWCTT-M---AYSA-DG-TRL--FSCGTSKDGESYLVEWN
   WD 7  581-620    -G-----A---IK-----RTY----S--GFRKRSSGVV---QFDT-TR-NRF--LAAG----DEFLIKFWD
   WD 8  624-664    -T-----N---LL-----TTI----DAEGGLPASPR-L---RFNK-EG-SLL--AVTS----SDNGIKILA
   WD 9  665-704    NR-----D---GM-----QML----R--ALEARAYD-T---NRAP-PE-PAV--SKPP----VGNTLGVVS
   WD10  731-773    MG-----GSRVRP-----RDR----V--GNDHSGME-G---GRTP-ET-KPR--IPDD----IPDRSKSWK
   WD11  779-822    EQ-----N---QC-----RTIRLPDS--LPPNKVAR-L---IYTN-AG-VAL--LALA----SNAVHKLWK
   WD12  845-888    PA-----S---GILMTNDISE----T--NPEDAVPC-I---ALSK-ND-SYV--MSAS----GG-KVSLFN
   WD13  892-931    -F-----K---VM-----TTF----M--PPPPAATF-L---AFHPQDN-NII--AIGM----EDSTIQIYN
   WD14  935-973    -D-----E---VK-----SKL----K--GHQKRITG-L---AFSN-TL-NVL--VSSG----ADAQLCMWG
   WD15  988-1022   ------------Q-----PGG----R--SPSIGDTR-V---QFHN-DQ-VRL--LVVH-----ESQLAVYD
   WD16 1024-1067   SK-LDRLR---QW-----VPQ----N--PFPAAISN-A---TYSC-DS-QLI--YAGF----VDGSVGVFD
   WD17 1078-1120   AP-----T---VH-----VPS----G--VSGSTVYP-LVIAAHPA-EP-NQF--ALGL----SDGGVQVIE

   WD40 Template    TG-----E---CL-----RTL----S--GHTSGVTS-V---SFSP-DG-KRL--VSGS----EDGTIKVWD