WDRR: WD40 Repeat Recognition
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| JobID: CME3H1659460478 Submitted: 2022-08-03 01:14:38 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79790617 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CmaCh02G017740 (Len=1047) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CmaCh02G017740, Len=1047): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSLISQNVAAISSLEKVTGETIVASSSPLRNLDASDVEISGADTTRPKKRKKEHKKEDAQLVKEQQQKMKKLENFLFGSL 80
WD40-rpts
Query 81 YSPAEFGKHEEVNGLSGEEKEAPALYIMDRSANSSLSAYEGDFGLLDESVNEEEPQQRKPVWIDEEEEKATVNITNVSRL 160
WD40-rpts
Query 161 RKLRKEEDEKSISGSEYVSRLRAQHAKLNPSTEWAQLDVQTSGGSDDDDLSSDDENAVVMADGHDDVDSIDDILRTSDNL 240
WD40-rpts (___________WD 1__________) (______________WD 2
Query 241 VEKSGGKLLPGLLEYSRLVDANAEEPSNGPIHSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPIRKASF 320
WD40-rpts _____________) (_________________WD 3________________) (_________________W
Query 321 LPDGSQVIISGRRRFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGT 400
WD40-rpts D 4________________) (_________________WD 5_________________) (___________
Query 401 VRSLAFTDNGFQLLSSGGDGQVYHWDLRTRTCIHKGVDEGCINGTALGTSPNGALFAAGSDSGIVNIYNREEFLGGKKKP 480
WD40-rpts _____WD 6________________)(___________________WD 7__________________) (__
Query 481 MKAIENLTTKVEFLKFNHDAQILAICSRMKKSSLKLIHVPSFTTFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKGS 560
WD40-rpts ________________WD 8_________________) (___________________WD 9_____________
Query 561 SSSSVVNGAGRAVNPKHKSVSSSETVHLLSPRMQLHRHAELRYVVEVSDSWGMANQVVKVKREAIAACITCPLCNKLLKE 640
WD40-rpts ______)(_______________WD10______________)
Query 641 ATTISECLHTFCRKCIHDKISDDELESCPVCNIDLGCAPLEKLRPDHNLEDLRAKIFPSRRRKAKTPEVAPVILPPVRRK 720
WD40-rpts
Query 721 ERSLSSLVVNSPRVSSHATTSGRRAAAAARIAAVLRTPRVSSEKRVKKEDDSMEDCSESSSSLETSEKFNQNKRPDSSPS 800
WD40-rpts
Query 801 KSTISLRNKEVENGVDSMEGNMDIWKPLNYLVEVANRSKCFKSNSENKVELAEVDGSEAQASKSRNRESKRKQKRENGKT 880
WD40-rpts
Query 881 RTDPVSPETEKPKKLRRVRQKKEPFYGNSSITPQVVLDATSARLERRAGPIWLSLIASDQEGDVTLPQIPASYLRIKDGN 960
WD40-rpts
Query 961 LPVSFVQKYLMRKLDLSSESEVEKLISSNLVEVKCMGHPVVPTLDLHSLVDLWLQTAATSEKISASIGSSAEDFIMVLYY 1040
WD40-rpts
Query 1041 ARKITVS 1047
WD40-rpts
 10 WD40-repeats found in QUERY=CmaCh02G017740 (Len=1047): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 188-214 3.67 266.31 0.01593 12.5% -10.19 WD 2: Seg 3 222-254 3.70 267.41 0.01540 7.5% 24.71 WD 3: Seg 6 258-296 8.18 452.74 4.9e-05 12.5% 44.98 WD 4: Seg 9 302-340 8.27 456.38 4.4e-05 15.0% 56.55 WD 5: Seg 13 346-385 6.44 380.87 0.00046 17.5% 50.37 WD 6: Seg 17 389-426 8.09 449.04 5.5e-05 32.5% 56.34 WD 7: Seg 21 427-469 7.69 432.20 9.3e-05 17.5% 53.41 WD 8: Seg 25 478-518 6.81 396.16 0.00029 17.5% 54.34 WD 9: Seg 29 524-567 8.29 456.91 4.3e-05 20.0% 35.19 WD10: Seg 32 568-602 3.38 254.31 0.02304 12.5% 11.51Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 188-214 -----------------LNPSTEWAQLDVQTSGGS--DDD----DLSSDD WD 2 222-254 ---------DGHDD-VDSIDDILRTSDNLVEKSGG---KL----LPGLLE WD 3 258-296 -LV---DANAEEPS-NGPIHSVQFHRNAQLLLATG--LDR----RLRFFQ WD 4 302-340 -NT---KIQSIFLE-DCPIRKASFLPDGSQVIISG--RRR----FFYSLD WD 5 346-385 -VD---KIGPLVGREEKSLEVFEVSPDSSTVAFIG--NEG----YILLVS WD 6 389-426 -KE---LIGTLKMN-GT-VRSLAFTDNGFQLLSSG--GDG----QVYHWD WD 7 427-469 LRTRTCIHKGVDEG-CINGTALGTSPNGALFAAGS--DSG----IVNIYN WD 8 478-518 -KK---PMKAIENL-TTKVEFLKFNHDAQILAICSRMKKS----SLKLIH WD 9 524-567 TFS---NWPPPKKN-LQYPSCLDFSPEGGYMAVGN--AAGKGSSSSSVVN WD10 568-602 --------GAGRAV-NPKHKSVSSSETVHLLSPRM--QLH----RHAELR WD40 Template TGE---CLRTLSGH-TSGVTSVSFSPDGKRLVSGS--EDG----TIKVWD |
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