Input parameters:

  Query = CmaCh08G003430 (Len=316)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh08G003430, Len=316):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASGGGNQQQAYKPYRHLKTLTAHTRAVSCVKFSNDGTLLASASLDKTLIIWSSSSLTLRHRLVGHSEGISDLAWSSDSH 80  
WD40-rpts                    (_________________WD 1________________)   (_________________WD 2__

Query       81 YICSASDDRTLRIWDARSSTGECVKTLRGHSDFVFCVNFNPQSNLIVSGSFDETIRIWEVKTGKCLHVIRAHSMPVTSVH 160 
WD40-rpts      ______________)     (_________________WD 3________________)   (_________________

Query      161 FNRDGSLIVSGSHDGSCKIWDASTGTCLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYSAGKFLKIYTGHVNR 240 
WD40-rpts      WD 4________________)   (_________________WD 5_________________)   (____________

Query      241 VHCIVSTFSVTNGKYIVSGSEDKCVYIWDLQQKTMIQKLEGHTDVVISVSCHPTENKIASAGLDGDRSVRVWIQDS 316 
WD40-rpts      ______WD 6__________________)   (__________________WD 7_________________)   

7 WD40-repeats found in QUERY=CmaCh08G003430 (Len=316):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-53      10.18  535.18  3.8e-06       42.5%     56.99
  WD 2:  Seg  6    57-95      10.14  533.68  4.0e-06       30.0%     57.05
  WD 3:  Seg 10   101-139     10.93  566.08  1.5e-06       47.5%     56.34
  WD 4:  Seg 14   143-181     11.20  577.32  1.0e-06       50.0%     57.44
  WD 5:  Seg 18   185-224      8.92  483.08  1.9e-05       35.0%     54.75
  WD 6:  Seg 22   228-269      8.84  479.70  2.1e-05       37.5%     57.35
  WD 7:  Seg 26   273-313      8.35  459.53  4.0e-05       32.5%     55.60

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-53     YRHLKTL-TAHTRAVSCVKFS---NDGTLLASAS--LDKTLIIWS
   WD 2   57-95     LTLRHRL-VGHSEGISDLAWS---SDSHYICSAS--DDRTLRIWD
   WD 3  101-139    GECVKTL-RGHSDFVFCVNFN---PQSNLIVSGS--FDETIRIWE
   WD 4  143-181    GKCLHVI-RAHSMPVTSVHFN---RDGSLIVSGS--HDGSCKIWD
   WD 5  185-224    GTCLKTLIDDKVPAVSFAKFS---PNGKFILVAT--LNDTLKLWN
   WD 6  228-269    GKFLKIY-TGHVNRVHCIVSTFSVTNGKYIVSGS--EDKCVYIWD
   WD 7  273-313    KTMIQKL-EGHTDVVISVSCH---PTENKIASAGLDGDRSVRVWI

   WD40 Template    GECLRTL-SGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD