Input parameters:

  Query = CmaCh05G004880 (Len=469)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh05G004880, Len=469):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEQFQNDDLAYIVDDYFEVGDFDDGQFFSDDDSHTDQSTEHIDSDFEDDIDTSTPRTDTSALDARNGKDIQGIPWERFTF 80  
WD40-rpts                                                                                      

Query       81 TRENYRENRLSQYKNYESLPISRDELEKVPFPSSIFVALYFLTSLISRVAALPLSHRYHNNFIIFRLSEQRRVAQECLRV 160 
WD40-rpts                                                                                      

Query      161 EKGNKFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSSLRRGKEVLNVAKQIVPTVKRPGVSSQSLS 240 
WD40-rpts        (_____________________WD 1____________________)                   (___________

Query      241 RVQISTMTVKENLIVAGGFQGELICKYVNNPGVAFCTKMTTEENAITNAVDVFLTPDGATRVVAANNDAKIRIYDAKTFT 320 
WD40-rpts      ______WD 2________________)        (_________________WD 3_________________)     

Query      321 CLNGFTFGWSVNVIESLKGHLDYSFASAWHPDGHILATGNQDTTCRLWDIRNTSKSLAVLKGRMGSIRCVKFSSDGKFLS 400 
WD40-rpts                (_________________WD 4________________)    (_________________WD 5_____

Query      401 TAEPADFVHIYESRTGYEQVQEIDLFGEIAGISFSPDTEALFVGVADRIYGSLLEFNKRHHNKYIDSMF 469 
WD40-rpts      ___________)   (_______________________WD 6______________________)   

6 WD40-repeats found in QUERY=CmaCh05G004880 (Len=469):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   163-209      3.96  278.33  0.01100       17.5%     39.53
  WD 2:  Seg  6   229-267      5.31  333.83  0.00197       15.0%     46.14
  WD 3:  Seg  9   276-315      7.52  425.38  0.00012       25.0%     45.08
  WD 4:  Seg 13   331-369      9.35  500.69  1.1e-05       30.0%     46.91
  WD 5:  Seg 17   374-412      9.22  495.51  1.3e-05       25.0%     55.60
  WD 6:  Seg 21   416-466      7.16  410.54  0.00018       27.5%     51.67

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  163-209    GNKFYDFQFNTRLVKSTIVHFQLRNLLWATSK-HDVYLMQNY------------SVMHWS
   WD 2  229-267    VKRPGVSSQSLSRVQIS--------TMTVKEN-LIVAGGFQG------------ELICKY
   WD 3  276-315    CTKMTTEENAITNAVDV--------FLTPDGATRVVAANNDA------------KIRIYD
   WD 4  331-369    VNVIESLKGHLDYSFAS--------AWHPDGH-ILATGNQDT------------TCRLWD
   WD 5  374-412    SKSLAVLKGRMGSIRCV--------KFSSDGK-FLSTAEPAD------------FVHIYE
   WD 6  416-466    GYEQVQEIDLFGEIAGI--------SFSPDTE-ALFVGVADRIYGSLLEFNKRHHNKYID

   WD40 Template    GECLRTLSGHTSGVTSV--------SFSPDGK-RLVSGSEDG------------TIKVWD