Input parameters:

  Query = CsaV3_4G032060 (Len=578)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CsaV3_4G032060, Len=578):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVSSEKLKGLSNGLSVVEPLGGSSRDLMARPLQSEGDSGDVIGSKGVIKRVEFVRIIANALYSLGYKKTGAYLEEESGI 80  
WD40-rpts                                                                                      

Query       81 PLHSPAVNVLMQQIHDGKWDESVETLHTIGLSDENIVKAASVLVLEQKFFELVERDKVTEALRTLRTEIAPHQINEKRIR 160 
WD40-rpts                                                                                      

Query      161 ELSSWLVSPSMRAQANSSCQRSAKAKSRTQLLEELQKLLPASLMIPEKRLEHLVERALLLQRDACTFHNSLNKEMSLYTD 240 
WD40-rpts                                                                                     (

Query      241 HDCGKNQIPSRTLQVLQDHSDEVWFLQFSHNGKYLASSSSDRSAIIWEVDLDGRISLKHRLLGHEQPVSLVSWSSDDSQL 320 
WD40-rpts      ______________________WD 1_____________________)(____________________WD 2_______

Query      321 LTCGVEEAVRRWDVTSGECLHVYEKAGLGLVSCGWFPDGKHILAGVNDKSICMWELDGNELEGWKGQRTLKISDLEITND 400 
WD40-rpts      ____________)   (_________________WD 3________________)   (_________________WD 4

Query      401 GKKIISICRDTAILLLDRELNVDKLIEEDQIITSFQLSKDNKFLLVNLLNQEIHLWNLEGEAEIVTTYTGHKRTRFVIRS 480 
WD40-rpts      ________________)(_________________WD 5_________________)    (__________________

Query      481 CFGGLDQAFIASGSEDSLVYIWHRGTGEVIEALAGHSGSVNCVSWNPTNPHMLASASDDHTIRIWGLRELDDVVKFKNTE 560 
WD40-rpts      WD 6__________________)   (_________________WD 7_________________)              

Query      561 QHSSSNGNGVHYTNGGTS 578 
WD40-rpts                        

7 WD40-repeats found in QUERY=CsaV3_4G032060 (Len=578):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   240-288      8.82  478.88  2.2e-05       35.0%     55.67
  WD 2:  Seg  9   289-333      8.72  474.68  2.5e-05       27.5%     55.79
  WD 3:  Seg 13   337-375      9.66  513.53  7.5e-06       35.0%     56.97
  WD 4:  Seg 17   379-417      8.30  457.36  4.3e-05       22.5%     58.47
  WD 5:  Seg 21   418-457      8.52  466.40  3.2e-05       22.5%     52.90
  WD 6:  Seg 25   462-503      7.30  416.40  0.00015       30.0%     57.19
  WD 7:  Seg 29   507-546      8.95  484.42  1.8e-05       40.0%     53.65

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  240-288    DH-----DCGKNQIPSRTLQVLQDHSDE---VWFLQFSH-NGKYLASSSSDRSAIIWE
   WD 2  289-333    VDLDGRISL---------KHRLLGHEQP---VSLVSWSS-DDSQLLTCGVEEAVRRWD
   WD 3  337-375    -G-----EC---------LHVYEKAGLG---LVSCGWFP-DGKHILAGVNDKSICMWE
   WD 4  379-417    -N-----EL---------EGWKGQRTLK---ISDLEITN-DGKKIISICRDTAILLLD
   WD 5  418-457    RE-----LN---------VDKLIEEDQI---ITSFQLSK-DNKFLLVNLLNQEIHLWN
   WD 6  462-503    -A-----EI---------VTTYTGHKRTRFVIRSCFGGL-DQAFIASGSEDSLVYIWH
   WD 7  507-546    -G-----EV---------IEALAGHSGS---VNCVSWNPTNPHMLASASDDHTIRIWG

   WD40 Template    TG-----EC---------LRTLSGHTSG---VTSVSFSP-DGKRLVSGSEDGTIKVWD