WDRR: WD40 Repeat Recognition
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| JobID: C28WF1476789821 Submitted: 2016-10-18 19:23:41 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 262461125 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = WDR91 (Len=747) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (WDR91, Len=747): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAEAVERTDELVREYLLFRGFTHTLRQLDAEIKADKEKGFRVDKIVDQLQQLMQVYDLAALRDYWSYLERRLFSRLEDIY 80
WD40-rpts
Query 81 RPTIHKLKTSLFRFYLVYTIQTNRNDKAQEFFAKQATELQNQAEWKDWFVLPFLPSPDTNPTFATYFSRQWADTFIVSLH 160
WD40-rpts
Query 161 NFLSVLFQCMPVPVILNFDAECQRTNQVQEENEVLRQKLFALQAEIHRLKKEEQQPEEEEALVQHKLPPYVSNMDRLGDS 240
WD40-rpts (___________________________________________________WD 1________________
Query 241 ELAMVCSQRNASLSQSPRVGFLSSLLPQSKKSPSRLSPAQGPPQPQSSAKKESFGGQGTKGKDPTSGAKDGKSLLSGLAT 320
WD40-rpts __________________________________)
Query 321 GESGWSQHRQRRLQDHGKERKELFSTTTSQCAEKKPEASGPEAEPCPELHTEPVEPLTRASSAGPEGGGVRPEQPFIVLG 400
WD40-rpts (________________________WD 2_______________________) (__
Query 401 QEEYGEHHSSIMHCRVDCSGRRVASLDVDGVIKVWSFNPIMQTKASSISKSPLLSLEWATKRDRLLLLGSGVGTVRLYDT 480
WD40-rpts _______________WD 3________________) (_________________WD 4_________________)
Query 481 EAKKNLCEININDNMPRILSLACSPNGASFVCSAAAPSLTSQVDFSAPDIGSKGMNQVPGRLLLWDTKTMKQQLQFSLDP 560
WD40-rpts (_________________WD 5________________)________WD 6__________) (________
Query 561 EPIAINCTAFNHNGNLLVTGAADGVIRLFDMQQHECAMSWRAHYGEVYSVEFSYDENTVYSIGEDGKFIQWNIHKSGLKV 640
WD40-rpts _________WD 7________________) (_________________WD 8________________)
Query 641 SEYSLPSDATGPFVLSGYSGYKQVQVPRGRLFAFDSEGNYMLTCSATGGVIYKLGGDEKVLESCLSLGGHRAPVVTVDWS 720
WD40-rpts (________________WD 9_______________) (__________________W
Query 721 TAMDCGTCLTASMDGKIKLTTLLAHKA 747
WD40-rpts D10_________________)
 10 WD40-repeats found in QUERY=WDR91 (Len=747): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 169-275 3.18 246.03 0.02969 17.5% -0.48 WD 2: Seg 4 342-394 5.06 323.59 0.00271 12.5% 19.50 WD 3: Seg 6 398-436 8.42 462.66 3.6e-05 27.5% 50.22 WD 4: Seg 10 440-479 7.14 409.41 0.00019 22.5% 55.38 WD 5: Seg 14 485-523 7.41 420.59 0.00013 15.0% 48.03 WD 6: Seg 17 521-546 2.90 234.56 0.04213 12.5% 19.61 WD 7: Seg 19 552-590 8.63 471.23 2.8e-05 25.0% 56.08 WD 8: Seg 23 594-632 9.16 492.95 1.4e-05 35.0% 55.83 WD 9: Seg 29 658-694 5.39 337.31 0.00177 10.0% 42.30 WD10: Seg 33 701-741 7.55 426.55 0.00011 32.5% 53.88Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 169-275 CM-------------PVPVILNFDAECQRTNQVQEENEVLRQKLFALQAEIHRLKKEEQQPEEEEALVQHKLPPYVSNMDRLGDSELAMVCSQRNASLSQSP--R-VGFLSSLLPQSKKSPSR WD 2 342-394 ELFSTTTSQCAEKKPEASGPE--------------------------------------A-------------------EPCPE----------LHTEPVEP--L-TRASSAGPEGGGVRPEQ WD 3 398-436 -V-------------LGQEEY--------------------------------------G-------------------EHHSS----------IMHCRVDC--S-GRRVASLDVDGVIKVWS WD 4 440-479 -I-------------MQTKAS--------------------------------------S-------------------ISKSP----------LLSLEWAT--KRDRLLLLGSGVGTVRLYD WD 5 485-523 -N-------------LCEINI--------------------------------------N-------------------DNMPR----------ILSLACSP--N-GASFVCSAAAPSLTSQV WD 6 521-546 ----------------------------------------------------------------------------------------------SQVDFSAP--D-IGSKGMNQVPGRLLLWD WD 7 552-590 -Q-------------QLQFSL--------------------------------------D-------------------PEPIA----------INCTAFNH--N-GNLLVTGAADGVIRLFD WD 8 594-632 -H-------------ECAMSW--------------------------------------R-------------------AHYGE----------VYSVEFSY--D-ENTVYSIGEDGKFIQWN WD 9 658-694 YS----------------GYK--------------------------------------Q-------------------VQVPR----------GRLFAFDS--E-GNYMLTCSATGGVIYKL WD10 701-741 -L-------------ESCLSL--------------------------------------G-------------------GHRAP----------VVTVDWSTAMD-CGTCLTASMDGKIKLTT WD40 Template TG-------------ECLRTL--------------------------------------S-------------------GHTSG----------VTSVSFSP--D-GKRLVSGSEDGTIKVWD |
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