WDRR: WD40 Repeat Recognition
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| JobID: BZGSU1659514325 Submitted: 2022-08-03 16:12:05 You can bookmark this page for further accessing the result in the future. Results on this server will be retained for 30 days. Job status: [Done] Total run time: 79736052 seconds. [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = CsaV3_2G032850 (Len=536) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (CsaV3_2G032850, Len=536): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEKELGNVVTERILPPTEQEVSNEIDVKVKKYMRGEGANLEVLKDKKLKGQLSAIEDLYGKSAKAAAEVEKWLMPSEGGY 80
WD40-rpts (______________WD 1_____________) (______________WD 2_
Query 81 LETEGLEKTWRIKQETISHEVDILSRRNQHDIILPALGPYSIDYTSNGRYMAIAGRKGHLALVDMKDLNLIKEFQVKETV 160
WD40-rpts _____________) (_________________WD 3________________) (____________
Query 161 RDVVFLHNELFFAAAQKKYPYIYNREGTELHCLKEHGSVRRLQFLKNHFLLVSINKFGQLHYQDVTTGSMVGSFRTGLGR 240
WD40-rpts ____WD 4_______________) (________________WD 5________________) (____________
Query 241 TDVMQVNPFNGVIATGHSGGSVAMWKPTSSAPLVKMLCHPGPVSALAFHPNGHLMATSGAERKIKLWDLRKFEVLQTLPG 320
WD40-rpts _____WD 6________________) (_________________WD 7________________) (________
Query 321 HAKTLDFSQKGLLAYGTGSFVQILGDFSGAQNYNRYMAHSMAKGYQIGKILFRPYEDVLGIGHSMGWSSILIPGSGEPNF 400
WD40-rpts _______WD 8______________) (___________________WD 9__________________)(_______
Query 401 DTWVANPFETSKQRREKEVRSLLDKLPPETISLNPTKIGTLMAVKKKEKKTKKERDAEEEAAVDAAKGITMKKKTKGRNK 480
WD40-rpts ______________________WD10____________________________)
Query 481 PTKREKKKHEIIEKAKRPFLHEQIKEEELSRKKSRLSEEVELPKSLQRFARKKTAT 536
WD40-rpts
 10 WD40-repeats found in QUERY=CsaV3_2G032850 (Len=536): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 1-33 6.14 368.17 0.00068 15.0% 24.87 WD 2: Seg 5 61-94 5.45 339.88 0.00163 10.0% 35.88 WD 3: Seg 9 106-144 7.43 421.45 0.00013 12.5% 54.05 WD 4: Seg 13 148-184 3.68 266.70 0.01574 7.5% 49.97 WD 5: Seg 17 187-224 6.94 401.54 0.00024 30.0% 57.56 WD 6: Seg 21 228-266 7.93 442.11 6.8e-05 12.5% 54.82 WD 7: Seg 25 270-308 9.03 487.49 1.7e-05 25.0% 56.76 WD 8: Seg 29 312-346 4.93 318.15 0.00321 30.0% 38.51 WD 9: Seg 33 350-392 5.64 347.59 0.00129 15.0% 51.29 WD10: Seg 37 393-455 5.17 328.36 0.00234 12.5% 29.01Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1-33 ------------------------------MEKELGN----VVTERILPPTEQEVSNEIDVKVKKYM WD 2 61-94 ------K-----------------------SAKAAAE----VEKWLMPSEGGYLETEGLEKTWRIKQ WD 3 106-144 -RRNQHD-----------------------IILPALG----PYSIDYTSNGRYMAIAGRKGHLALVD WD 4 148-184 -LNLIKE-----------------------FQVKET-----VRDVVFLHNELFFAAAQ-KKYPYIYN WD 5 187-224 -GTELHC-----------------------LKEHGS-----VRRLQFLKNHFLLVSINKFGQLHYQD WD 6 228-266 -GSMVGS-----------------------FRTGLGR----TDVMQVNPFNGVIATGHSGGSVAMWK WD 7 270-308 -SAPLVK-----------------------MLCHPGP----VSALAFHPNGHLMATSGAERKIKLWD WD 8 312-346 -FEVLQT-----------------------LPGH-------AKTLDFSQKG-LLAYGTGSFVQILGD WD 9 350-392 -AQNYNR-----------------------YMAHSMAKGYQIGKILFRPYEDVLGIGHSMGWSSILI WD10 393-455 PGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPE----TISLNPTKIGTLMAVKKKEKKTKKER WD40 Template TGECLRT-----------------------LSGHTSG----VTSVSFSPDGKRLVSGSEDGTIKVWD |
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