Input parameters:

  Query = APAF1 (Len=1248)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (APAF1, Len=1248):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 80  
WD40-rpts                                                                                      

Query       81 KDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGK 160 
WD40-rpts                                                                                      

Query      161 SVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLL 240 
WD40-rpts                                                                                      

Query      241 ILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS 320 
WD40-rpts                                                                                      

Query      321 PLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400 
WD40-rpts                                                                                      

Query      401 CILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDC 480 
WD40-rpts                                                                                      

Query      481 MYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVGPAHLIHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPF 560 
WD40-rpts                                                                                      

Query      561 PNIVQLGLCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQ 640 
WD40-rpts                                                  (_________________WD 1______________

Query      641 VFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 720 
WD40-rpts      __)   (_________________WD 2________________)   (__________________WD 3_________

Query      721 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVI 800 
WD40-rpts      ________)   (_________________WD 4________________)           (_________________

Query      801 VKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRG 880 
WD40-rpts      __WD 5__________________)    (_________________WD 6________________)   (________

Query      881 HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT 960 
WD40-rpts      _________WD 7________________)(_________________WD 8_________________)(_________

Query      961 EAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFL 1040
WD40-rpts      ________WD 9________________)   (_________________WD10________________)  (______

Query     1041 RGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPL 1120
WD40-rpts      __________WD11________________)   (_________________WD12________________)   (___

Query     1121 HELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIK 1200
WD40-rpts      ______________WD13________________)          (________________WD14______________

Query     1201 WWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1248
WD40-rpts      __)   (_________________WD15________________)   

15 WD40-repeats found in QUERY=APAF1 (Len=1248):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   605-643      7.65  430.84  9.7e-05       30.0%     53.56
  WD 2:  Seg 16   647-685      9.07  489.31  1.6e-05       30.0%     57.94
  WD 3:  Seg 20   689-729      7.99  444.82  6.3e-05       32.5%     55.30
  WD 4:  Seg 24   733-771     10.56  551.01  2.3e-06       52.5%     57.78
  WD 5:  Seg 29   783-825      5.54  343.44  0.00146       22.5%     45.55
  WD 6:  Seg 32   830-868      8.00  445.30  6.2e-05       22.5%     56.69
  WD 7:  Seg 36   872-910      9.76  517.90  6.5e-06       37.5%     57.07
  WD 8:  Seg 40   911-950      7.42  421.30  0.00013        7.5%     44.11
  WD 9:  Seg 42   951-989      6.77  394.52  0.00030       20.0%     49.08
  WD10:  Seg 46   993-1031     9.07  489.46  1.6e-05       30.0%     58.08
  WD11:  Seg 50  1034-1071     7.02  404.56  0.00022       35.0%     54.43
  WD12:  Seg 54  1075-1113     8.78  477.18  2.3e-05       30.0%     57.96
  WD13:  Seg 58  1117-1155     9.15  492.64  1.4e-05       32.5%     57.22
  WD14:  Seg 63  1166-1203     7.79  436.39  8.2e-05       37.5%     39.37
  WD15:  Seg 66  1207-1245     7.44  421.80  0.00013       22.5%     58.26

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  605-643    -NLSRLVV----RPHTDAVYHACFSEDGQR--IASCGADKTLQVFK
   WD 2  647-685    -GEKLLEI----KAHEDEVLCCAFSTDDRF--IATCSVDKKVKIWN
   WD 3  689-729    -GELVHTY----DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD
   WD 4  733-771    -KECRNTM----FGHTNSVNHCRFSPDDKL--LASCSADGTLKLWD
   WD 5  783-825    VKQFFLNLEDPQEDMEVIVKCCSWSADGAR--IMVAAKN-KIFLFD
   WD 6  830-868    -GLLGEIH----TGHHSTIQYCDFSPQNHL--AVVALSQYCVELWN
   WD 7  872-910    -RSKVADC----RGHLSWVHGVMFSPDGSS--FLTSSDDQTIRLWE
   WD 8  911-950    TKKVCKNS----AVMLKQEVDVVFQENEVM--VLAVDHIRRLQLIN
   WD 9  951-989    -GRTGQID----YLTEAQVSCCCLSPHLQY--IAFGDENGAIEILE
   WD10  993-1031   -NRIFQSR----FQHKKTVWHIQFTADEKT--LISSSDDAEIQVWN
   WD11 1034-1071   -LDKCIFL----RGHQETVKDFRLLKNS-R--LLSWSFDGTVKVWN
   WD12 1075-1113   -GNKEKDF----VCHQGTVLSCDISHDATK--FSSTSADKTAKIWS
   WD13 1117-1155   -LLPLHEL----RGHNGCVRCSAFSVDSTL--LATGDDNGEIRIWN
   WD14 1166-1203   APLSEEGA----ATHGGWVTDLCFSPDGKM--LISAG--GYIKWWN
   WD15 1207-1245   -GESSQTF----YTNGTNLKKIHVSPDFKT--YVTVDNLGILYILQ

   WD40 Template    TGECLRTL----SGHTSGVTSVSFSPDGKR--LVSGSEDGTIKVWD