Input parameters:

  Query = CmaCh11G007030 (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CmaCh11G007030, Len=370):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIASCISKLHSGYGNTKSLLAAEP 80  
WD40-rpts                        (_________________WD 1________________)                    (__

Query       81 HCFLQGHDGPAYDVKFFDAGDNTLLLSCGDDGHIRGWRWNECTDIEVPIYLQGSHIEPVMDLMNLQYKGPWGALSPIPEN 160 
WD40-rpts      ________________WD 2_________________)                            (_____________

Query      161 NAIATNTQSGSIFSAAGDSCAYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKTGKCIQLIDPA 240 
WD40-rpts      ____WD 3________________)   (_________________WD 4________________)            (

Query      241 KDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCDNQILGVGAEPLLTRFDIHGS 320 
WD40-rpts      ________________WD 5________________)   (_______________WD 6_______________)  (_

Query      321 ILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGSHLCTFFCQYR 370 
WD40-rpts      _______________WD 7________________)              

7 WD40-repeats found in QUERY=CmaCh11G007030 (Len=370):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    19-57       6.06  364.94  0.00075       20.0%     52.37
  WD 2:  Seg  4    78-118      7.05  406.07  0.00021       32.5%     54.29
  WD 3:  Seg 10   147-185      7.31  416.77  0.00015       10.0%     38.33
  WD 4:  Seg 13   189-227     10.00  527.93  4.8e-06       27.5%     56.22
  WD 5:  Seg 18   240-277      6.75  393.45  0.00031       15.0%     41.42
  WD 6:  Seg 21   281-316      4.31  292.80  0.00703        7.5%     54.98
  WD 7:  Seg 25   319-356      7.50  424.31  0.00012       25.0%     52.43

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-57     KEREVQTRTVFRT-AWAPSL--SGCPESIVVASSDGSIASYS
   WD 2   78-118    -AEPHCFLQGHDGPAYDVKFFDAGDNTLLLSCGDDGHIRGWR
   WD 3  147-185    -YKGPWGALSPIPENNAIAT--NTQSGSIFSAAGDSCAYCWD
   WD 4  189-227    -GKIKMVFKGHSDYLHCIVA--RNTVNQIITGSEDGTARIWD
   WD 5  240-277    -AKDNKKQKGNFSCVRCIAL--DASESWLACAD-GRSFSVWN
   WD 6  281-316    -SDFISRTLTRSS-MQDMVF--CDN--QILGVGAEPLLTRFD
   WD 7  319-356    -GSILSEIQCAPQSAFSVAV--HPSGVAAVGGY-GGLVDVIS

   WD40 Template    TGECLRTLSGHTSGVTSVSF--SPDGKRLVSGSEDGTIKVWD